PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G254400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 724aa    MW: 83628 Da    PI: 9.458
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G254400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.5e-07699722326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          ++Cr++++ G+C+yG+ C ++H+
  Sevir.9G254400.1.p 699 PRPCRYYYKQGWCPYGEGCWYSHD 722
                         69*****************99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF689069.16E-6118158No hitNo description
Gene3DG3DSA:1.10.720.307.4E-7118158IPR003034SAP domain
PfamPF020373.8E-7123157IPR003034SAP domain
PROSITE profilePS5010314.906696723IPR000571Zinc finger, CCCH-type
SMARTSM003560.0083696723IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6697722IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-5698722IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-6698722IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MAATAGGVTR AGHLPRQEDR REGDEGSVES EEEEEVESDD EGSEASSPSD LGEPDAGSDE  60
DPTFDPDADG DLEVEAVLRA RMSRMSISAS ARKGRKGAAV LKMGKEEIDL LAMVDRLKQD  120
DQLEKLKVYE CKAYLRMHKL RLTGKKEVLL NRIREHIEVK NNGEEKYPVS NFVLNCKGDA  180
CKGDVVIFEQ NIYRRKKGAP REVKGRLCGQ RTNAGRIIKE SYGTAKQQHT FTIEILWSKG  240
YKPWPPLHPL LIKGRNLYKD KTMRQPWPDE EERNRVIQEK HERGDVARKS RAARIHEKEI  300
EKLSRLKSCF RNRMKDKIKE QQNMNQKQPQ ELKQKVESTN TVQQRVGERK GPSPQNGEPG  360
NTRQQHISSK AISTHHNEVF PQMGATRNFQ QEFNGNQVSS NQHGGPQPFS EPTHTQQMFK  420
DSHHHHSYQQ RNEVLSQEVA MITSRKAFLG RQAPSQHNGG SGSTKHHPIS SKPTPSTFKY  480
PQQPPKHQNH NEEDGPKRTY REHHHQNNAD HSTEYDESSF HPQGKFTQHA SPYQHGSNFH  540
QNAPGSHQAH QPQRPRNQHQ SKAYYATKYN DSFQPQGKST HHANAYQHSS SSHQYAQANH  600
RVHQPLRPRN QDFNSSDPSY GQDYHHQGCH DYRGITRGQY HPQQSQNQNY YSRRPMTQDQ  660
YLTQQNHHPN YNDHRKTNQK QYHPRQNQPQ QFLEQQPQPR PCRYYYKQGW CPYGEGCWYS  720
HDI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G254400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986580.20.0zinc finger CCCH domain-containing protein 62
SwissprotQ338N20.0C3H62_ORYSJ; Zinc finger CCCH domain-containing protein 62
TrEMBLK4AMX10.0K4AMX1_SETIT; Uncharacterized protein
STRINGSi040267m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131072022
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]