PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G240800.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | E2F/DP | ||||||||
Protein Properties | Length: 249aa MW: 27820.2 Da PI: 4.8282 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 75.8 | 4.2e-24 | 2 | 79 | 15 | 71 |
E2F_TDP 15 klleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71 +++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g Sevir.9G240800.4.p 2 RVCEKVESkGRTTYNEVADELVAEfsdpninidspdpdnpsaqqyDEKNIRRRVYDALNVLMAMEIISK-DKKEIQWRG 79 79***9999************************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF009404 | 1.0E-103 | 1 | 248 | IPR015648 | Transcription factor DP |
SuperFamily | SSF46785 | 7.48E-17 | 1 | 80 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.1E-37 | 1 | 85 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.7E-28 | 1 | 79 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.5E-21 | 2 | 79 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14458 | 2.62E-40 | 84 | 187 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 1.41E-40 | 86 | 196 | No hit | No description |
SMART | SM01138 | 6.9E-80 | 86 | 246 | IPR014889 | Transcription factor DP, C-terminal |
Pfam | PF08781 | 2.0E-41 | 87 | 219 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007049 | Biological Process | cell cycle | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MRVCEKVESK GRTTYNEVAD ELVAEFSDPN INIDSPDPDN PSAQQYDEKN IRRRVYDALN 60 VLMAMEIISK DKKEIQWRGL PKTSMNDIEE LKTEIVGLKG RIDKKSAYLQ DLQDQYVSLQ 120 NLVQRNEQLY GSGDAPSGGV ALPFILVQTR PHATVEVEIS EDMQLVHFDF NSTPFELQDD 180 SFVLKAMGLS GKEETDGTQA PVANGGECSS TPNNYWHQSP QPTRPRGVRL PNSPPIPGIL 240 KGRVKHEH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 7e-30 | 1 | 84 | 17 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G240800.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036566 | 0.0 | BT036566.1 Zea mays full-length cDNA clone ZM_BFb0123L22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004983025.1 | 0.0 | transcription factor-like protein DPB | ||||
Swissprot | Q9FNY2 | 1e-104 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | K4AC69 | 0.0 | K4AC69_SETIT; Uncharacterized protein | ||||
STRING | Si036476m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 1e-102 | Transcription factor DP |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G240800.4.p |