PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G240800.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | E2F/DP | ||||||||
Protein Properties | Length: 304aa MW: 32464.1 Da PI: 4.8666 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 85.4 | 4.4e-27 | 84 | 171 | 2 | 71 |
E2F_TDP 2 keksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwk 70 ++++Lr+++++ ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+ Sevir.9G240800.3.p 84 NGRGLRQFSMR---VCEKVESkGRTTYNEVADELVAEfsdpninidspdpdnpsaqqyDEKNIRRRVYDALNVLMAMEIISK-DKKEIQWR 170 789********...*****999************************************************************.*******9 PP E2F_TDP 71 g 71 g Sevir.9G240800.3.p 171 G 171 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF009404 | 3.3E-120 | 8 | 300 | IPR015648 | Transcription factor DP |
Gene3D | G3DSA:1.10.10.10 | 2.5E-44 | 79 | 177 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 4.3E-38 | 83 | 171 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 6.9E-25 | 85 | 171 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.77E-19 | 86 | 172 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
CDD | cd14458 | 5.96E-42 | 176 | 279 | IPR014889 | Transcription factor DP, C-terminal |
SMART | SM01138 | 1.4E-60 | 178 | 302 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 5.23E-40 | 178 | 287 | No hit | No description |
Pfam | PF08781 | 1.4E-39 | 179 | 290 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007049 | Biological Process | cell cycle | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MVSGAGPSSG PAHSASTGAG GGSPSDKGGA APSVSASVST PASESTVARR LNGLDLQADD 60 APSSQPATSK KKKRGARAVG PDKNGRGLRQ FSMRVCEKVE SKGRTTYNEV ADELVAEFSD 120 PNINIDSPDP DNPSAQQYDE KNIRRRVYDA LNVLMAMEII SKDKKEIQWR GLPKTSMNDI 180 EELKTEIVGL KGRIDKKSAY LQDLQDQYVS LQNLVQRNEQ LYGSGDAPSG GVALPFILVQ 240 TRPHATVEVE ISEDMQLVHF DFNSTPFELQ DDSFVLKAMG LSGKEETDGT QAPVANGGST 300 FNC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 6e-38 | 77 | 176 | 1 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G240800.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036566 | 0.0 | BT036566.1 Zea mays full-length cDNA clone ZM_BFb0123L22 mRNA, complete cds. | |||
GenBank | HQ858767 | 0.0 | HQ858767.1 Zea mays clone UT1683 E2F-DP transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004983025.1 | 0.0 | transcription factor-like protein DPB | ||||
Swissprot | Q9FNY2 | 1e-129 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | K4AC69 | 0.0 | K4AC69_SETIT; Uncharacterized protein | ||||
STRING | Si036476m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 1e-125 | Transcription factor DP |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G240800.3.p |