PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G230500.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ARR-B | ||||||||
Protein Properties | Length: 250aa MW: 28492.8 Da PI: 8.0844 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 72.3 | 7.2e-23 | 179 | 228 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k rl Wt +LH++F+ av++L Gs+kA+P +ile+mkvk Lt+e+v+SHLQ Sevir.9G230500.2.p 179 KSRLSWTMQLHRQFIAAVNSL-GSDKAVPNKILEIMKVKHLTREQVASHLQ 228 68*******************.***************************** PP | |||||||
2 | Response_reg | 57.3 | 8.6e-20 | 12 | 120 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 vl++d + + +++++++l k y +v++ ++ +ea+ + +++++Dli++D+ p+ d l +l+e +++ +p ++++++g+ +++ ++ Sevir.9G230500.2.p 12 VLVIDNNSSYLSVMEELLIKCSY-KVTTYKNVREAMSFIygNQQTVDLIICDVFFPTEDSLLILQEVTSKF-GIPTVIMSSNGDTATVMKY 100 89*********************.***************877777**********************9999.9****************** PP HHTTESEEEESS--HHHHHH CS Response_reg 90 lkaGakdflsKpfdpeelvk 109 + Ga+dfl Kp +eel + Sevir.9G230500.2.p 101 ITNGASDFLIKPLRIEELKN 120 *****************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 3.56E-26 | 8 | 135 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 2.4E-28 | 9 | 139 | No hit | No description |
SMART | SM00448 | 1.7E-15 | 10 | 122 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 31.488 | 11 | 126 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 6.8E-16 | 12 | 120 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.70E-17 | 13 | 126 | No hit | No description |
SuperFamily | SSF46689 | 4.3E-14 | 177 | 229 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 178 | 228 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.8E-21 | 179 | 228 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.5E-5 | 181 | 228 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MDQALWPSGL RVLVIDNNSS YLSVMEELLI KCSYKVTTYK NVREAMSFIY GNQQTVDLII 60 CDVFFPTEDS LLILQEVTSK FGIPTVIMSS NGDTATVMKY ITNGASDFLI KPLRIEELKN 120 IWQHVFRKQI GAEHRKCNNA EHVDQLPYRT MGITEATATL DSEIRENNGT VTDIRDLRKS 180 RLSWTMQLHR QFIAAVNSLG SDKAVPNKIL EIMKVKHLTR EQVASHLQAS PEKFESKIAQ 240 RWRSFIIEP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates Hd3a and other FT-like genes independently from Hd1. May also activate MADS-box transcription factors involved in flowering regulation. {ECO:0000269|PubMed:15078816}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G230500.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Daily oscillation and diurnal expression in plants grown in short day (SD) but not in long day (LD) conditions. {ECO:0000269|PubMed:15078816}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797974.1 | 1e-145 | two-component response regulator EHD1-like isoform X1 | ||||
Swissprot | Q7Y0W3 | 1e-107 | EHD1_ORYSI; Two-component response regulator EHD1 | ||||
TrEMBL | A0A368SJM8 | 1e-167 | A0A368SJM8_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ib00832.1.p | 1e-148 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 2e-52 | response regulator 2 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G230500.2.p |