PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G230500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ARR-B | ||||||||
Protein Properties | Length: 333aa MW: 38099 Da PI: 6.0532 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 83.8 | 1.8e-26 | 179 | 233 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k rl Wt +LH++F+ av++L Gs+kA+P +ile+mkvk Lt+e+v+SHLQkYRl+ Sevir.9G230500.1.p 179 KSRLSWTMQLHRQFIAAVNSL-GSDKAVPNKILEIMKVKHLTREQVASHLQKYRLH 233 68*******************.********************************97 PP | |||||||
2 | Response_reg | 56.4 | 1.6e-19 | 12 | 120 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 vl++d + + +++++++l k y +v++ ++ +ea+ + +++++Dli++D+ p+ d l +l+e +++ +p ++++++g+ +++ ++ Sevir.9G230500.1.p 12 VLVIDNNSSYLSVMEELLIKCSY-KVTTYKNVREAMSFIygNQQTVDLIICDVFFPTEDSLLILQEVTSKF-GIPTVIMSSNGDTATVMKY 100 89*********************.***************877777**********************9999.9****************** PP HHTTESEEEESS--HHHHHH CS Response_reg 90 lkaGakdflsKpfdpeelvk 109 + Ga+dfl Kp +eel + Sevir.9G230500.1.p 101 ITNGASDFLIKPLRIEELKN 120 *****************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 7.83E-26 | 8 | 134 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 4.2E-28 | 9 | 141 | No hit | No description |
SMART | SM00448 | 1.7E-15 | 10 | 122 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 31.488 | 11 | 126 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.3E-15 | 12 | 120 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.14E-17 | 13 | 126 | No hit | No description |
PROSITE profile | PS51294 | 11.269 | 176 | 235 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.3E-18 | 177 | 236 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.3E-26 | 178 | 235 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-24 | 179 | 234 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.7E-7 | 181 | 231 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MDQALWPSGL RVLVIDNNSS YLSVMEELLI KCSYKVTTYK NVREAMSFIY GNQQTVDLII 60 CDVFFPTEDS LLILQEVTSK FGIPTVIMSS NGDTATVMKY ITNGASDFLI KPLRIEELKN 120 IWQHVFRKQI GAEHRKCNNA EHVDQLPYRT MGITEATATL DSEIRENNGT VTDIRDLRKS 180 RLSWTMQLHR QFIAAVNSLG SDKAVPNKIL EIMKVKHLTR EQVASHLQKY RLHQRNSSQR 240 LHKDGAPSSS SHESSILRTQ LNTSSNSLYF DQDGCMEITD YSLPMDDLSS GLDCMLGERE 300 RNNYSPEGFQ NFRWDPDKQG YETTYLWNFE AE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-15 | 178 | 238 | 4 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates Hd3a and other FT-like genes independently from Hd1. May also activate MADS-box transcription factors involved in flowering regulation. {ECO:0000269|PubMed:15078816}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G230500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Daily oscillation and diurnal expression in plants grown in short day (SD) but not in long day (LD) conditions. {ECO:0000269|PubMed:15078816}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022679340.1 | 0.0 | two-component response regulator EHD1 | ||||
Swissprot | Q7Y0W3 | 1e-143 | EHD1_ORYSI; Two-component response regulator EHD1 | ||||
TrEMBL | A0A368SJM8 | 0.0 | A0A368SJM8_SETIT; Uncharacterized protein | ||||
STRING | Si039992m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11222 | 27 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 3e-55 | response regulator 2 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G230500.1.p |