PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G222300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 298aa    MW: 32539.6 Da    PI: 6.6714
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G222300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.12.5e-51101381129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrF P+deelv++yL++kv+++++    ++ evd++  ePw+Lp  +k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ 
  Sevir.9G222300.1.p  10 LPPGFRFYPSDEELVCFYLRNKVANQRVAS-GTLVEVDLHAREPWELPDVAKLTAEEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDRV 99 
                         79*************************888.88***************77777889*********************************** PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                         v++  ++elvg++ktLvfy+grap+g+kt Wvmhe+rle
  Sevir.9G222300.1.p 100 VHEPaTRELVGMRKTLVFYRGRAPNGQKTGWVMHEFRLE 138
                         **9878889***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-608156IPR003441NAC domain
PROSITE profilePS5100558.7210156IPR003441NAC domain
PfamPF023652.0E-2811137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGLREMDSAL PPGFRFYPSD EELVCFYLRN KVANQRVASG TLVEVDLHAR EPWELPDVAK  60
LTAEEWYFFS FRDRKYATGS RTNRATKTGY WKATGKDRVV HEPATRELVG MRKTLVFYRG  120
RAPNGQKTGW VMHEFRLETP NSPPKEDWVL CRVFNKMKLS SEGEETGSSG IHNGHTATVS  180
AEPSSPPPAF LGSLPNPAAA PADRFYQQRQ VTTGSGSSSG TLLMNLQAML QQGSSCFLDY  240
CSPVVHHGAA VGAPHNAGCG DDAAVAMALG HVGFEEHGLG EIEMEYAQAQ GGCGLYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-5111564165NO APICAL MERISTEM PROTEIN
1ut4_B3e-5111564165NO APICAL MERISTEM PROTEIN
1ut7_A3e-5111564165NO APICAL MERISTEM PROTEIN
1ut7_B3e-5111564165NO APICAL MERISTEM PROTEIN
3swm_A5e-5111567168NAC domain-containing protein 19
3swm_B5e-5111567168NAC domain-containing protein 19
3swm_C5e-5111567168NAC domain-containing protein 19
3swm_D5e-5111567168NAC domain-containing protein 19
3swp_A5e-5111567168NAC domain-containing protein 19
3swp_B5e-5111567168NAC domain-containing protein 19
3swp_C5e-5111567168NAC domain-containing protein 19
3swp_D5e-5111567168NAC domain-containing protein 19
4dul_A3e-5111564165NAC domain-containing protein 19
4dul_B3e-5111564165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G222300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1814923e-92KC181492.1 Urochloa ruziziensis clone 214913 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982866.10.0protein CUP-SHAPED COTYLEDON 3
SwissprotQ9FWX21e-59NAC7_ARATH; NAC domain-containing protein 7
SwissprotQ9S8515e-60NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLK4AD780.0K4AD78_SETIT; Uncharacterized protein
STRINGSi036835m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-83NAC domain containing protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  4. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  5. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  6. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  7. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]