PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G219100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ARF | ||||||||
Protein Properties | Length: 685aa MW: 74705 Da PI: 7.1521 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.3 | 7e-24 | 119 | 220 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF Sevir.9G219100.1.p 119 FAKTLTQSDANNGGGFSVPRYCAETIfpkldyrADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL- 206 89****************************996555555..8999*********************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 +++ +el+v+++r+ Sevir.9G219100.1.p 207 -RTEHGELCVGIRRA 220 .55999*******97 PP | |||||||
2 | Auxin_resp | 118.6 | 5.2e-39 | 275 | 358 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ as +++FevvY+Prast+eFvvk+++v++a+++++++GmRfkmafetedss++++ +Gt+++v+ +dp+rW+nS+Wr+L+ Sevir.9G219100.1.p 275 AASLASRGQPFEVVYYPRASTPEFVVKAASVQNAMRNHWCPGMRFKMAFETEDSSRISWfMGTIASVQVADPIRWSNSPWRLLQ 358 68899*****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-36 | 110 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.29E-29 | 116 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.37E-21 | 118 | 219 | No hit | No description |
Pfam | PF02362 | 4.9E-22 | 119 | 220 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.5E-22 | 119 | 221 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.929 | 119 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 9.6E-34 | 275 | 358 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 20.935 | 589 | 667 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 685 aa Download sequence Send to blast |
MKEAGDERCL DPQLWHACAG GMVQMPPARS RVYYFPQGHA EHAHGGGAAE LAAAAGPRGL 60 PPLVLCCVAG VRFLADPETD EVFAKIRLVP VAPSGEADLR DPDELGGDPA DAREKLSSFA 120 KTLTQSDANN GGGFSVPRYC AETIFPKLDY RADPPVQTVL AKDVHGEVWK FRHIYRGTPR 180 RHLLTTGWST FVNQKKLVAG DSIVFLRTEH GELCVGIRRA KRVSCGGMEC MSGWNAPGYG 240 AFSAFLKDEE SKMMKGPGGY MRGMGKVKIA DVVEAASLAS RGQPFEVVYY PRASTPEFVV 300 KAASVQNAMR NHWCPGMRFK MAFETEDSSR ISWFMGTIAS VQVADPIRWS NSPWRLLQVT 360 WDEPDLLQNV KCVNPWLVEL VSSIPPIHLG PFSPPRKKLR MPQHPDFPFD GQLLNPVFHG 420 NPLGPSNSPI CCFPDNAPAG IQGARHAQFG LPLTDHQLNK LHLGLFQGSG FNRLDAITPQ 480 SRISKGFVIT SAPVKESVSC LLTIGTPQGT EKSDDRKKPH IMLFGKPILT EQQMNSGGSR 540 ETFSPEVTGN GSSDGNAQKT GNVSDGSGSS ICIGFSSQGR EASELGLEAG HCKVFMESED 600 VGRTIDLSVF GSYEELYGQL ADMFGIEKAE IMSHLHYRDA AGAVKHTGEE PFSDFMKVAR 660 RLTITERGEG RLQKPLIEYM VERA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-74 | 10 | 383 | 51 | 392 | Auxin response factor 5 |
4ldy_A | 2e-74 | 13 | 383 | 22 | 357 | Auxin response factor 1 |
4ldy_B | 2e-74 | 13 | 383 | 22 | 357 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 394 | 400 | PRKKLRM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G219100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982839.1 | 0.0 | auxin response factor 22 | ||||
Swissprot | Q9AV47 | 0.0 | ARFV_ORYSJ; Auxin response factor 22 | ||||
TrEMBL | K4A6M0 | 0.0 | K4A6M0_SETIT; Auxin response factor | ||||
STRING | Si034525m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G219100.1.p |
Publications ? help Back to Top | |||
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