PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G188200.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

FAR1

Protein Properties

Length: 812aa MW: 92410.5 Da PI: 8.3526

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G188200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.4	1.1e-23	63	154	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA++vGFsvr+ ++ k +g ++++vC++eg+r+ +k+ ++k +r+r+ tr+gC+a++ k++ dgk+ev+++++ H+He Sevir.9G188200.1.p 63 EFYKAYAERVGFSVRTWTQLKG-GDGALLWKRYVCTREGFRKGNKRVitgANKPKRNRKLTRCGCEAMIGFKRNADGKYEVARFVESHTHE 152 6************9998887.8999************99989999999*********************************** PP FAR1 89 la 90 l Sevir.9G188200.1.p 153 LL 154 96 PP
2	FAR1	70.9	2.9e-22	196	286	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 Y+ YA +vGFsvr+s+++k g ++++vC++eg+r+ ++ + ++k++r+r+ tr+gC+a++ k++ +g++ev+++ + H Hel Sevir.9G188200.1.p 196 LYKVYADHVGFSVRTSTQSKD-CGGVALWKRYVCTREGFRKGKQLEvtgENKRKRNRKLTRCGCEAMIAFKRKANGTYEVARFIEAHRHEL 285 7*************99997.8999************9999998999999*********************************9 PP FAR1 90 a 90 + Sevir.9G188200.1.p 286 V 286 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.6E-21	63	154	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.0E-19	196	286	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.2E-18	400	492	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.002	681	717	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	8.4E-5	692	713	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.5E-8	692	719	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 812 aa Download sequence Send to blast
MATEDDSSFN FMGAMGLCQG DMDCSKAPET SMPPSGSMNE PEWGDGLKPC IGMTFDSWED 60 GEEFYKAYAE RVGFSVRTWT QLKGGDGALL WKRYVCTREG FRKGNKRVIT GANKPKRNRK 120 LTRCGCEAMI GFKRNADGKY EVARFVESHT HELLSASQRQ LIKSSREGLN YVPDCDDRLK 180 PLSGMTFNSW EEGEKLYKVY ADHVGFSVRT STQSKDCGGV ALWKRYVCTR EGFRKGKQLE 240 VTGENKRKRN RKLTRCGCEA MIAFKRKANG TYEVARFIEA HRHELVRPSK KRSEKSNREV 300 SSEMKGTLLG TPEIFNLLNS EKGEQRNIGC TNVDLQNQRC GIQKAIKESD CQVFINIMKK 360 KQSFNSEFFF DYQLDEKGMV KHIFWADGSC RKNYTLFGDV ISFYSTCDTN QHGPIITLFT 420 GVNHHNTCVT FGAGYLADNR IQSCTWLCQA FLKAMGGVAP KVVITNEDPS MECAIRDVFQ 480 TTKHRLCTWK ILMKLSDKVG PMLNSNTQFS NRIRACVLGS ETPEEFELKW SSIISEFGLE 540 NNAWLTEKYN MRQTWIPAYF HDLSLGRILQ TTSRLESENA FFGHFNNQQP VLLEFWVRFQ 600 TAVEEQQRTE LCNDNATLCM LPMLQSPWSI ESHGREVYTN EIFKLFQDEV IAARDSCDVK 660 SMAQLGEIRI TGISDDSGKI KTVQYNTCTK IAQCSCRLFE SVGIPCSHII VVLKGEKCNE 720 IPSHYIMQRW TKMATWINIF GSNMHMLEGS RTSLPPTITR LYSESCSKFN SGIDVAKQCE 780 KKMRYLHKAI SDAVDHVMQM GPISEYNGRQ V*

Sequence ? help Back to Top

Protein Sequence Length: 812 aa Download sequence Send to blast

MATEDDSSFN FMGAMGLCQG DMDCSKAPET SMPPSGSMNE PEWGDGLKPC IGMTFDSWED  60
GEEFYKAYAE RVGFSVRTWT QLKGGDGALL WKRYVCTREG FRKGNKRVIT GANKPKRNRK  120
LTRCGCEAMI GFKRNADGKY EVARFVESHT HELLSASQRQ LIKSSREGLN YVPDCDDRLK  180
PLSGMTFNSW EEGEKLYKVY ADHVGFSVRT STQSKDCGGV ALWKRYVCTR EGFRKGKQLE  240
VTGENKRKRN RKLTRCGCEA MIAFKRKANG TYEVARFIEA HRHELVRPSK KRSEKSNREV  300
SSEMKGTLLG TPEIFNLLNS EKGEQRNIGC TNVDLQNQRC GIQKAIKESD CQVFINIMKK  360
KQSFNSEFFF DYQLDEKGMV KHIFWADGSC RKNYTLFGDV ISFYSTCDTN QHGPIITLFT  420
GVNHHNTCVT FGAGYLADNR IQSCTWLCQA FLKAMGGVAP KVVITNEDPS MECAIRDVFQ  480
TTKHRLCTWK ILMKLSDKVG PMLNSNTQFS NRIRACVLGS ETPEEFELKW SSIISEFGLE  540
NNAWLTEKYN MRQTWIPAYF HDLSLGRILQ TTSRLESENA FFGHFNNQQP VLLEFWVRFQ  600
TAVEEQQRTE LCNDNATLCM LPMLQSPWSI ESHGREVYTN EIFKLFQDEV IAARDSCDVK  660
SMAQLGEIRI TGISDDSGKI KTVQYNTCTK IAQCSCRLFE SVGIPCSHII VVLKGEKCNE  720
IPSHYIMQRW TKMATWINIF GSNMHMLEGS RTSLPPTITR LYSESCSKFN SGIDVAKQCE  780
KKMRYLHKAI SDAVDHVMQM GPISEYNGRQ V*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G188200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004982579.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A368SI37	0.0	A0A368SI37_SETIT; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-92	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Sevir.9G188200.1.p