PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G177600.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Dof

Protein Properties

Length: 363aa MW: 36056.2 Da PI: 8.2221

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G177600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.8	2.7e-39	43	103	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+ l+cprCds ntkfCyynnyslsqPr+fCk+CrryWtkGGalrnvPvGgg+rknk+s+ Sevir.9G177600.1.p 43 PEQGLRCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPVGGGCRKNKRSR 103 67899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	7.6E-33	45	101	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-26	47	100	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.609	47	101	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	49	85	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MASSTPVAAG DDAVGTRKGG TGGGGGAAPP PPATQQQQPP PPPEQGLRCP RCDSPNTKFC 60 YYNNYSLSQP RHFCKTCRRY WTKGGALRNV PVGGGCRKNK RSRSAAAAAA ASRLSLNLPV 120 EGVGGDQQAA RLGFLGATGS APVASSPIGG GGPAADYQQA AGGAVGMMAL PRLHALGVGQ 180 YVPFGEWPSG AGGDISSGGG GGHAMSGGGA HGGAVSSNIA SSIESLSFIN QDLHWKLQQQ 240 RLATMFLGPP PPPPPTSSAS HIDGAPAAAP AHIGGAFLQM AGPPGMESTM PAATSWFMDS 300 SYAVLPSPHA HANNTAAAAI TAAATTTNCN VGRSSGGDDD DAANCGSAIP SWGDMSTFAM 360 LP*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MASSTPVAAG DDAVGTRKGG TGGGGGAAPP PPATQQQQPP PPPEQGLRCP RCDSPNTKFC  60
YYNNYSLSQP RHFCKTCRRY WTKGGALRNV PVGGGCRKNK RSRSAAAAAA ASRLSLNLPV  120
EGVGGDQQAA RLGFLGATGS APVASSPIGG GGPAADYQQA AGGAVGMMAL PRLHALGVGQ  180
YVPFGEWPSG AGGDISSGGG GGHAMSGGGA HGGAVSSNIA SSIESLSFIN QDLHWKLQQQ  240
RLATMFLGPP PPPPPTSSAS HIDGAPAAAP AHIGGAFLQM AGPPGMESTM PAATSWFMDS  300
SYAVLPSPHA HANNTAAAAI TAAATTTNCN VGRSSGGDDD DAANCGSAIP SWGDMSTFAM  360
LP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G177600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU947524	4e-92	EU947524.1 Zea mays clone 346044 mRNA sequence.
GenBank	KJ726977	4e-92	KJ726977.1 Zea mays clone pUT3678 C2C2-DOF transcription factor (DOF32) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004982507.1	0.0	dof zinc finger protein DOF5.7
TrEMBL	K4ABQ4	0.0	K4ABQ4_SETIT; Uncharacterized protein
STRING	Si036311m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	1e-31	Dof family protein

Link Out ? help Back to Top
Phytozome	Sevir.9G177600.1.p