PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G169400.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

MYB

Protein Properties

Length: 331aa MW: 36527.9 Da PI: 5.8287

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G169400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.2	1.7e-17	99	145	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd l ++ +++G++ W+ Iar+++ Rt+kqc++rw ++l Sevir.9G169400.1.p 99 RGQWTPEEDTMLQELMERHGKRAWSDIAREFP-DRTGKQCRERWINHL 145 89****************************.**********996 PP
2	Myb_DNA-binding	45.7	1.5e-14	152	192	2	44
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++WT++E++ lv+++k++G++ W +Iar+++ gR ++++k+ + Sevir.9G169400.1.p 152 MAWTEDEELMLVKYHKKFGKK-WVKIARHIP-GRPENSIKNQY 192 58*****************.*****.******987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.948	94	149	IPR017930	Myb domain
SuperFamily	SSF46689	2.37E-29	97	192	IPR009057	Homeodomain-like
SMART	SM00717	6.1E-16	98	147	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.2E-26	100	152	IPR009057	Homeodomain-like
CDD	cd00167	2.02E-15	102	145	No hit	No description
Pfam	PF13921	4.6E-18	102	159	No hit	No description
SMART	SM00717	1.8E-10	150	198	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	11.063	150	200	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-17	153	192	IPR009057	Homeodomain-like
CDD	cd00167	1.78E-11	153	192	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MAIRIGEKSS MFYEMFERDE QHALGQQDVT IDQAINFGVD DYKIPLKGAS GFNKGHGGDP 60 IQDTPITEDH GQMIDSLALK KVVGKAYDGS SPTGNNATRG QWTPEEDTML QELMERHGKR 120 AWSDIAREFP DRTGKQCRER WINHLDPEIK NMAWTEDEEL MLVKYHKKFG KKWVKIARHI 180 PGRPENSIKN QYAAERSLET KRKNKSKETR PSIVADYIRG LKEEEEGKGT PAVPTSPVHA 240 AGSGQEINNE VKVPFPGSNF AAASSQAPAS GDNPVPPSSS MSAPFLGRNA GDHFPLEAMY 300 DDPVFIDGHQ EPFAYPPGEW IPAGAGAPLC *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-27	98	194	26	122	MYB TRANSFORMING PROTEIN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G169400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012704394.1	0.0	transcription factor MYB62-like
TrEMBL	A0A368SHR2	0.0	A0A368SHR2_SETIT; Uncharacterized protein (Fragment)
STRING	Pavir.Ib03926.1.p	1e-105	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP32205	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	2e-42	myb domain protein 98

Link Out ? help Back to Top
Phytozome	Sevir.9G169400.1.p