PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G164800.4.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Protein Properties

Length: 331aa MW: 37331.6 Da PI: 8.382

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G164800.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	35.4	2e-11	172	238	17	84
E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 17 vlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 ++k++a h +++s +tl++ +++++W +k+ r+ s++ +l + W eFv++n+++egD++++ Sevir.9G164800.4.p 172 GISKEYAFPHF--PHKSANVTLQTpSKSNKWHLKFYKRNASRKNMLMGQWLEFVRDNHVQEGDICLLFP 238 57777776664..457789***4555***77999999********************9764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	1.88E-6	2	53	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	4.6E-6	2	54	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE pattern	PS01359	0	5	50	IPR019786	Zinc finger, PHD-type, conserved site
Gene3D	G3DSA:2.40.330.10	6.4E-18	147	255	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.34E-18	148	255	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.52E-18	155	253	No hit	No description
SMART	SM01019	0.0015	155	255	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.589	156	255	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.2E-9	171	250	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MDTVCEVCGN IGYKHLLVCC RDCKCSAVHL YCLDKVIFDA SLAEWWCDEC LQRRGEVPCS 60 RSLERVSSQR SPNHDHFGST VQQQVTKRVK SAKNAGPRRK SKEDIPSAKY SLDSDDLQAS 120 SKAHYVLSYR SYLSEAQKQR VMAFIKEIQP KITVFVAVML KRNVQPPGPF LGISKEYAFP 180 HFPHKSANVT LQTPSKSNKW HLKFYKRNAS RKNMLMGQWL EFVRDNHVQE GDICLLFPTA 240 GGRRYTFTVY LFCASATHSI GRAGFQMVCP CPGRSSTKMA SEVHIMEEST NDEHISLETD 300 MREISDDSLE GEDSGGLSQP PYIVPCRNSI *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G164800.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797619.1	0.0	B3 domain-containing protein Os03g0619800-like isoform X2
Refseq	XP_025797620.1	0.0	B3 domain-containing protein Os03g0619800-like isoform X3
TrEMBL	A0A2T7C3R3	0.0	A0A2T7C3R3_9POAL; Uncharacterized protein
TrEMBL	A0A2T7C3R7	0.0	A0A2T7C3R7_9POAL; Uncharacterized protein
STRING	Pavir.Ia01277.1.p	1e-173	(Panicum virgatum)

Link Out ? help Back to Top
Phytozome	Sevir.9G164800.4.p