PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G164800.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 258aa MW: 29204.9 Da PI: 9.9402 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.4 | 7.1e-15 | 188 | 251 | 36 | 99 |
EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 + + g++W ++ + +++++ +l +GW +F+++ngL++gD+++F+l+++ ++ +++v+++++ Sevir.9G164800.3.p 188 AVALQCMGKTWITQMVIHNGRRW-FLNGGWVRFARDNGLRVGDICLFELKKNkRKLTMKVHIISR 251 44455589*******77777666.6999**********************9999999***99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.40.10 | 3.0E-6 | 2 | 54 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57903 | 1.17E-6 | 2 | 53 | IPR011011 | Zinc finger, FYVE/PHD-type |
PROSITE pattern | PS01359 | 0 | 5 | 50 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:2.40.330.10 | 1.2E-21 | 147 | 251 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-19 | 148 | 250 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 7.3E-9 | 155 | 252 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.66E-17 | 155 | 250 | No hit | No description |
PROSITE profile | PS50863 | 11.914 | 156 | 252 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-13 | 176 | 251 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MDTVCEVCGN IGYKHLLVCC RDCKCSAVHL YCLDKVIFDA SLAEWWCDEC LQRRGEVPCS 60 RSLERVSSQR SPNHDHFGST VQQQVTKRVK SAKNAGPRRK SKEDIPSAKY SLDSDDLQAS 120 SKAHYVLSYR SYLSEAQKQR VMAFIKEIQP KITVFVAVML KRNVQPPGPF LELGVRYAAA 180 HLPASGQAVA LQCMGKTWIT QMVIHNGRRW FLNGGWVRFA RDNGLRVGDI CLFELKKNKR 240 KLTMKVHIIS REQSSLK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 234 | 241 | LKKNKRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G164800.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022685567.1 | 0.0 | B3 domain-containing protein Os03g0619600-like | ||||
TrEMBL | A0A2T7C3Q0 | 1e-109 | A0A2T7C3Q0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia01277.1.p | 1e-88 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 9e-08 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G164800.3.p |