PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G164800.17.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 344aa    MW: 38869.3 Da    PI: 8.2833
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G164800.17.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.32.1e-111852511784
                          E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3  17 vlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                           ++k++a  h   +++s  +tl++ +++++W +k+  r+ s++ +l + W eFv++n+++egD++++  
  Sevir.9G164800.17.p 185 GISKEYAFPHF--PHKSANVTLQTpSKSNKWHLKFYKRNASRKNMLMGQWLEFVRDNHVQEGDICLLFP 251
                          57777776664..457789*****4555*******77999999**********************9764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579038.23E-8866IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.1E-61367IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE patternPS0135901863IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:2.40.330.107.0E-18160268IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-18161268IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0015168268IPR003340B3 DNA binding domain
CDDcd100171.35E-17168266No hitNo description
PROSITE profilePS5086311.589169268IPR003340B3 DNA binding domain
PfamPF023621.3E-9184263IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MKDFDLSVFH LHPTDTVCEV CGNIGYKHLL VCCRDCKCSA VHLYCLDKVI FDASLAEWWC  60
DECLQRRGEV PCSRSLERVS SQRSPNHDHF GSTVQQQVTK RVKSAKNAGP RRKSKEDIPS  120
AKYSLDSDDL QASSKAHYVL SYRSYLSEAQ KQRVMAFIKE IQPKITVFVA VMLKRNVQPP  180
GPFLGISKEY AFPHFPHKSA NVTLQTPSKS NKWHLKFYKR NASRKNMLMG QWLEFVRDNH  240
VQEGDICLLF PTAGGRRYTF TVYLFCASAT HSIGRAGFQM VCPCPGRSST KMASEVHIME  300
ESTNDEHISL ETDMREISDD SLEGEDSGGL SQPPYIVPCR NSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G164800.17.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797619.10.0B3 domain-containing protein Os03g0619800-like isoform X2
TrEMBLA0A2T7C3R30.0A0A2T7C3R3_9POAL; Uncharacterized protein
TrEMBLA0A2T7C3R70.0A0A2T7C3R7_9POAL; Uncharacterized protein
STRINGPavir.Ia01277.1.p1e-171(Panicum virgatum)