PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G164800.16.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 271aa    MW: 30742.6 Da    PI: 9.8277
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G164800.16.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.37.8e-152012643699
                          EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                   B3  36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                           +  +  g++W  ++ + +++++ +l +GW +F+++ngL++gD+++F+l+++ ++ +++v+++++
  Sevir.9G164800.16.p 201 AVALQCMGKTWITQMVIHNGRRW-FLNGGWVRFARDNGLRVGDICLFELKKNkRKLTMKVHIISR 264
                          44455589*******77777666.6999**********************9999999***99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.55E-8866IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.4E-61367IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE patternPS0135901863IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:2.40.330.101.4E-21160264IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-19161263IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-16168263No hitNo description
SMARTSM010197.3E-9168265IPR003340B3 DNA binding domain
PROSITE profilePS5086311.914169265IPR003340B3 DNA binding domain
PfamPF023624.2E-13189264IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MKDFDLSVFH LHPTDTVCEV CGNIGYKHLL VCCRDCKCSA VHLYCLDKVI FDASLAEWWC  60
DECLQRRGEV PCSRSLERVS SQRSPNHDHF GSTVQQQVTK RVKSAKNAGP RRKSKEDIPS  120
AKYSLDSDDL QASSKAHYVL SYRSYLSEAQ KQRVMAFIKE IQPKITVFVA VMLKRNVQPP  180
GPFLELGVRY AAAHLPASGQ AVALQCMGKT WITQMVIHNG RRWFLNGGWV RFARDNGLRV  240
GDICLFELKK NKRKLTMKVH IISREQSSLK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247254LKKNKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G164800.16.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022685567.10.0B3 domain-containing protein Os03g0619600-like
TrEMBLA0A2T7C3Q01e-108A0A2T7C3Q0_9POAL; Uncharacterized protein
TrEMBLA0A2T7C3R71e-107A0A2T7C3R7_9POAL; Uncharacterized protein
STRINGPavir.Ia01277.1.p3e-87(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-08B3 family protein