PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G164800.11.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Protein Properties

Length: 335aa MW: 37791.1 Da PI: 8.382

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G164800.11.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	35.3	2e-11	176	242	17	84
E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 17 vlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 ++k++a h +++s +tl++ +++++W +k+ r+ s++ +l + W eFv++n+++egD++++ Sevir.9G164800.11.p 176 GISKEYAFPHF--PHKSANVTLQTpSKSNKWHLKFYKRNASRKNMLMGQWLEFVRDNHVQEGDICLLFP 242 57777776664..457789***4555***77999999********************9764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	7.2E-7	5	56	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	3.5E-6	5	57	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE pattern	PS01359	0	8	53	IPR019786	Zinc finger, PHD-type, conserved site
Gene3D	G3DSA:2.40.330.10	6.6E-18	151	259	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.34E-18	152	259	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.92E-18	159	257	No hit	No description
SMART	SM01019	0.0015	159	259	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.589	160	259	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.2E-9	175	254	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MFLQDTVCEV CGNIGYKHLL VCCRDCKCSA VHLYCLDKVI FDASLAEWWC DECLQRRGEV 60 PCSRSLERVS SQRSPNHDHF GSTVQQQVTK RVKSAKNAGP RRKSKAEDIP SAKYSLDSDD 120 LQASSKAHYV LSYRSYLSEA QKQRVMAFIK EIQPKITVFV AVMLKRNVQP PGPFLGISKE 180 YAFPHFPHKS ANVTLQTPSK SNKWHLKFYK RNASRKNMLM GQWLEFVRDN HVQEGDICLL 240 FPTAGGRRYT FTVYLFCASA THSIGRAGFQ MVCPCPGRSS TKMASEVHIM EESTNDEHIS 300 LETDMREISD DSLEGEDSGG LSQPPYIVPC RNSI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G164800.11.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797617.1	0.0	B3 domain-containing protein Os03g0619800-like isoform X1
Refseq	XP_025797620.1	0.0	B3 domain-containing protein Os03g0619800-like isoform X3
Refseq	XP_025797621.1	0.0	B3 domain-containing protein Os03g0619600-like isoform X4
TrEMBL	A0A2T7C3P8	0.0	A0A2T7C3P8_9POAL; Uncharacterized protein
STRING	Pavir.Ia01277.1.p	1e-172	(Panicum virgatum)

Link Out ? help Back to Top
Phytozome	Sevir.9G164800.11.p