PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G164800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 345aa    MW: 38940.4 Da    PI: 8.2833
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G164800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.32.1e-111862521784
                         E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3  17 vlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          ++k++a  h   +++s  +tl++ +++++W +k+  r+ s++ +l + W eFv++n+++egD++++  
  Sevir.9G164800.1.p 186 GISKEYAFPHF--PHKSANVTLQTpSKSNKWHLKFYKRNASRKNMLMGQWLEFVRDNHVQEGDICLLFP 252
                         57777776664..457789*****4555*******77999999**********************9764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579038.23E-8866IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.1E-61367IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE patternPS0135901863IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:2.40.330.107.0E-18161269IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-18162269IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-17169267No hitNo description
SMARTSM010190.0015169269IPR003340B3 DNA binding domain
PROSITE profilePS5086311.589170269IPR003340B3 DNA binding domain
PfamPF023621.3E-9185264IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MKDFDLSVFH LHPTDTVCEV CGNIGYKHLL VCCRDCKCSA VHLYCLDKVI FDASLAEWWC  60
DECLQRRGEV PCSRSLERVS SQRSPNHDHF GSTVQQQVTK RVKSAKNAGP RRKSKAEDIP  120
SAKYSLDSDD LQASSKAHYV LSYRSYLSEA QKQRVMAFIK EIQPKITVFV AVMLKRNVQP  180
PGPFLGISKE YAFPHFPHKS ANVTLQTPSK SNKWHLKFYK RNASRKNMLM GQWLEFVRDN  240
HVQEGDICLL FPTAGGRRYT FTVYLFCASA THSIGRAGFQ MVCPCPGRSS TKMASEVHIM  300
EESTNDEHIS LETDMREISD DSLEGEDSGG LSQPPYIVPC RNSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G164800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797620.10.0B3 domain-containing protein Os03g0619800-like isoform X3
RefseqXP_025797621.10.0B3 domain-containing protein Os03g0619600-like isoform X4
TrEMBLA0A2T7C3P80.0A0A2T7C3P8_9POAL; Uncharacterized protein
STRINGPavir.Ia01277.1.p1e-171(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172