PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G164700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 541aa    MW: 61195.7 Da    PI: 8.2396
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G164700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.52.8e-144695373099
                         ..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                  B3  30 keesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                         +++++tl+l+   g++We k+ + +++++ ++ +GW +F++ ngL++gD+++F+l+++ +  ++ v+++rk
  Sevir.9G164700.1.p 469 PTKGQTLILQC-GGKTWEAKMMFHNGRRW-FINGGWPNFARGNGLRVGDICLFELKKEeKLLTMAVHIIRK 537
                         34555666554.99*******99888877.5899**********************988999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.09E-6253IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.5E-6354IPR013083Zinc finger, RING/FYVE/PHD-type
Gene3DG3DSA:2.40.330.105.6E-14254356IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-14255357IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.023262357IPR003340B3 DNA binding domain
CDDcd100177.47E-14262357No hitNo description
PROSITE profilePS5086310.701263362IPR003340B3 DNA binding domain
PfamPF023629.7E-8278347IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-20432537IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-18433537IPR015300DNA-binding pseudobarrel domain
CDDcd100172.64E-17438536No hitNo description
SMARTSM010196.6E-6440538IPR003340B3 DNA binding domain
PROSITE profilePS5086312.238442538IPR003340B3 DNA binding domain
PfamPF023622.5E-12459537IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MDILCEVCGD IGFRHLLLCC GDCKHSAIHQ YCLEKVVFDA SLIEWFCYEC LQRRGEVTCI  60
RSLEKVPSER PSSNAHFGSI VHQPITKRVE SARDAVPWRN RKRKSFVSKY ASHNKIYSPR  120
KKHAKNKSNM PYSPNDGCEE VFSCSGIKNI PSVQDRSADS IDTSSISQHD ITEPSESSER  180
FTEYQKGSSY PRGKNLKMAA ASSSSEESGE DIPSENVSLA SDDLQSPLGA DYVLSYRTYL  240
SKAQKVRVMT LIQEIQPEFT VYIATMRKTS VQSPGPYLGI TKEYALAHCP DRSTTVTLEM  300
PGKNKKWHPK FYKRDESRKN FLMGQWLDFV RDNHVQEGDI VLLLPTKGGN RSIFTVYLLH  360
ETATHSSMAS EVHIEEPTTG EHASQESGTL EIPHESLESE DSDSLFLPPY FVPCKNLLSK  420
SQKRIVEERV RAIRSEVPLC VAVMKNNNVG VAQRWMLELG SRYASVYLPT KGQTLILQCG  480
GKTWEAKMMF HNGRRWFING GWPNFARGNG LRVGDICLFE LKKEEKLLTM AVHIIRKELF  540
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G164700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982416.10.0B3 domain-containing protein Os03g0619800
SwissprotQ6AV211e-115Y3982_ORYSJ; B3 domain-containing protein Os03g0619800
TrEMBLA0A368SHJ60.0A0A368SHJ6_SETIT; Uncharacterized protein
STRINGSi035278m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172