PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G163500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 334aa MW: 36686.6 Da PI: 7.6599 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.2 | 5.4e-56 | 5 | 130 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+++yL++kv++ + + ++i++vd++k+ePwdLp+k++ +ekewyfFs rd+ky+tg r+nrat+sgyWk+tgkdke Sevir.9G163500.1.p 5 LPPGFRFHPTDEELITYYLTRKVSDFAFAT-RAIADVDLNKCEPWDLPSKASMGEKEWYFFSMRDRKYPTGIRTNRATDSGYWKTTGKDKE 94 79*************************999.89***************999999************************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ g lvg+kktLvfy+grapkgekt+Wvmheyrl Sevir.9G163500.1.p 95 IFH-CGMLVGMKKTLVFYRGRAPKGEKTSWVMHEYRL 130 ***.99*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-64 | 3 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.215 | 5 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-29 | 6 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MEEGLPPGFR FHPTDEELIT YYLTRKVSDF AFATRAIADV DLNKCEPWDL PSKASMGEKE 60 WYFFSMRDRK YPTGIRTNRA TDSGYWKTTG KDKEIFHCGM LVGMKKTLVF YRGRAPKGEK 120 TSWVMHEYRL QNKFPYKPNK EEWVVCRVFK KSQIIKIRPP QGSPTMDDSL GHDANASLSE 180 LGELDVSSIL GGFAPAPAAH TSSSSPGGAL HHGAGGESFG HTRVDMSAYM SWMAAANQGA 240 AAAAAAAMLP WATTTTPGLF GNVFAPNQHQ LVQKPLPFAG QPRDLGGFVG NAGSEHAMFA 300 SSLAKVEMEC DQQQPPPPPE QQLAMNESTW RAF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-57 | 5 | 151 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-57 | 5 | 151 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-57 | 5 | 151 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-57 | 5 | 151 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-56 | 5 | 151 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-56 | 5 | 151 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-56 | 5 | 151 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-56 | 5 | 151 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-56 | 5 | 151 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-56 | 5 | 151 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-56 | 5 | 151 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-56 | 5 | 151 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 9e-57 | 5 | 151 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 9e-57 | 5 | 151 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00364 | DAP | Transfer from AT3G18400 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G163500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363171 | 0.0 | AK363171.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013D22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982400.1 | 0.0 | protein CUP-SHAPED COTYLEDON 1 | ||||
TrEMBL | K4ACC8 | 0.0 | K4ACC8_SETIT; Uncharacterized protein | ||||
STRING | Si036535m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7919 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 3e-94 | NAC domain containing protein 58 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G163500.1.p |