PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G154600.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NF-YA | ||||||||
Protein Properties | Length: 262aa MW: 28087.4 Da PI: 10.0861 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 98.5 | 6.7e-31 | 80 | 136 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d+p+YVN+KQy++Il+RR +Rak+e+e++l +k+rkpylheSRh hA+rR+RgsgGrF Sevir.9G154600.3.p 80 DAPIYVNPKQYEGILRRRRARAKAERENRL-AKGRKPYLHESRHLHAMRRARGSGGRF 136 68****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 6.2E-34 | 78 | 139 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.965 | 79 | 139 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 5.9E-28 | 82 | 136 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.2E-22 | 82 | 104 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.2E-22 | 113 | 136 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MLPGNSESDG KGEKVPEHST TVSLQSPFPE YNGRFEIGLG QSMAPSNYSS ADQCYGMLTT 60 YGMRSMSSGR LLLPLNAPAD APIYVNPKQY EGILRRRRAR AKAERENRLA KGRKPYLHES 120 RHLHAMRRAR GSGGRFLNTK KEGAANANGS GRTAAAAPPA RFATSPSFEP PRAPPGLGNV 180 SNQRCHSRSS VSSLSGSEVS SIYDHHEDHA SHHRQYGGGM VRAPPFFTPL PAIMDGDHGG 240 AAAIPSFKWA ASDGCCELLK A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 9e-18 | 80 | 138 | 2 | 61 | HAPB protein |
4g92_A | 9e-18 | 80 | 138 | 2 | 61 | HAPB protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G154600.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982309.1 | 0.0 | nuclear transcription factor Y subunit A-10 | ||||
Refseq | XP_004982310.1 | 0.0 | nuclear transcription factor Y subunit A-10 | ||||
Refseq | XP_004982311.1 | 0.0 | nuclear transcription factor Y subunit A-10 | ||||
TrEMBL | K4AC58 | 0.0 | K4AC58_SETIT; Uncharacterized protein | ||||
STRING | Si036465m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.3 | 2e-19 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G154600.3.p |