PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G150000.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 767aa    MW: 85579.1 Da    PI: 6.7836
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G150000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1101.11.1e-3184187291
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..............tekerrtraetrtgCkaklkvkkekdgkwev 78 
                         fYn YA++vGFs+r+s +++s+r+g++++r+fvC keg+r+ + k+              + + rrtra+tr+gCka+++vkk+++g+w v
  Sevir.9G150000.2.p  84 FYNVYAHRVGFSTRISVMHRSRRDGSVMSRQFVCAKEGFRTYRGKNevaradvadaadddSARGRRTRAVTRVGCKAMIRVKKQDNGRWSV 174
                         **********************************************************999999*************************** PP

                FAR1  79 tkleleHnHelap 91 
                         tkle+ HnH+l+p
  Sevir.9G150000.2.p 175 TKLETAHNHPLVP 187
                         **********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-2984187IPR004330FAR1 DNA binding domain
PfamPF105516.6E-21303395IPR018289MULE transposase domain
PfamPF044342.3E-9579616IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.534581619IPR007527Zinc finger, SWIM-type
SMARTSM005752.2E-7594621IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
MERGAGSDQG SPGSEMGDGD NDSVGYGAEM EVDAGSGSAG ASAPASSASA SASASAYAAR  60
AGAYDGVDPF EGMEFDDEED AWTFYNVYAH RVGFSTRISV MHRSRRDGSV MSRQFVCAKE  120
GFRTYRGKNE VARADVADAA DDDSARGRRT RAVTRVGCKA MIRVKKQDNG RWSVTKLETA  180
HNHPLVPANQ AHCLRPHKPL SECGKQRPFG GHRNGGMLLA IEPPPTPLTP SVPHASIVQM  240
VPHYVSDGIG NATRVILDYV KRMQAEDPAF FYAMQFVEGR PVGNVFWADA RARTSYKDFG  300
DAIVFDDYFK RSKHEFPLVV FTGVNHHCQP VLFGCAIIAD NNEASFVWLF ETFLLAMSGQ  360
HPASLTMEHD NTLHSAAAKV YPLTRLQFCK WHIMNEAQDK LSHLLNAFPS FHVDFINCIN  420
MSQTIDEFEA NWKALISMVS SQNTEWLNSM YNCRHQWVPV YLRDTFFGDL SLKQQCATRS  480
SLFEGYISAR TDSQSFIQQY EKALDCCYEK EVKEEFETKY SLPDIKTSSP IEKQGAELYT  540
RSMFLKFQQE MIDASVYTAE MVKEESGVSI YIVTKSEGSE KPVTVQFSSS GSSATCSCRM  600
FEYFGIVCRH ILTVFGVRGI SALPSQYFVK RWTKNAMDRS SSKKVDEVNR VEEPKEEQRS  660
SAEDDEHSPT WRYNSLCREA LRYAEEGASS LEVYIVAMQA LQEAANRVNM AKRGIGQVAP  720
LAVMPIAAQR PESFGKFQEI SSNKQKKRKR NSNSSRENTT SNQLIC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G150000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4662010.0AF466201.1 Sorghum bicolor clone SBTXS_0032H17 putative cytochrome P450-like protein, putative DNA-binding protein homolog, TATA-binding protein, hypothetical protein M3E9.200, 3-glucanase, K-exchanger-like protein, small heat shock-like protein, methionine synthase protein, putative far-red impaired response protein, and putative vegetative storage protein genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982265.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLK4A5670.0K4A567_SETIT; Uncharacterized protein
STRINGSi034021m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-165FAR1-related sequence 5