PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G140700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TALE
Protein Properties Length: 330aa    MW: 36248.5 Da    PI: 5.4894
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G140700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98.1e-092452782255
                         SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                          +yps+ e++ LA+++gL+ +q+ +WF N+R ++
  Sevir.9G140700.1.p 245 WPYPSELEKAALAESTGLDAKQINNWFINQRKRH 278
                         59*****************************885 PP
2ELK35.22.6e-12198219122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELK++Ll+KYsgyL+sL+ E+s
  Sevir.9G140700.1.p 198 ELKNRLLNKYSGYLSSLWRELS 219
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.5E-2059103IPR005540KNOX1
PfamPF037907.9E-2161101IPR005540KNOX1
SMARTSM012561.7E-25109160IPR005541KNOX2
PfamPF037913.3E-22114158IPR005541KNOX2
PROSITE profilePS5121310.51198218IPR005539ELK domain
PfamPF037891.4E-9198219IPR005539ELK domain
SMARTSM011889.5E-7198219IPR005539ELK domain
PROSITE profilePS5007112.471218281IPR001356Homeobox domain
SMARTSM003891.5E-11220285IPR001356Homeobox domain
SuperFamilySSF466892.65E-18220290IPR009057Homeodomain-like
CDDcd000869.95E-13221281No hitNo description
Gene3DG3DSA:1.10.10.608.3E-26223282IPR009057Homeodomain-like
PfamPF059207.1E-16238277IPR008422Homeobox KN domain
PROSITE patternPS000270256279IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEQLPVLASG SKATTTTPFY LALDHRASTS SSPPAEAPTP PPAAVSDPSG QSNSERGSEI  60
IKAKIMSHPL YPALLRAFID CRKVGAPPEV VGRLSALAGE VEMNSGDGQE QPTEADPELD  120
QFMEIYCHML VRYRQELTRP IEEADEFFRS MEAQIDSFSL DDNGYEGGGS SDEDEQETVD  180
LAGIPVPETG SSSGEDKELK NRLLNKYSGY LSSLWRELSR KKKKGKLPRD ARQKLLHWWQ  240
LHYRWPYPSE LEKAALAEST GLDAKQINNW FINQRKRHWK PAPPAMVMAT DYRLRPYGGG  300
GAPSSSASAA ALRAEGQYFA GGSSYPRGP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G140700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0406220.0BT040622.1 Zea mays full-length cDNA clone ZM_BFc0104L02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982196.10.0homeobox protein knotted-1-like 4
SwissprotQ75LX71e-145KNOS4_ORYSJ; Homeobox protein knotted-1-like 4
TrEMBLK4ACH30.0K4ACH3_SETIT; Uncharacterized protein
STRINGSi036580m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.13e-75KNOTTED-like from Arabidopsis thaliana