PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G136800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | GATA | ||||||||
Protein Properties | Length: 298aa MW: 31628.3 Da PI: 4.4652 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.3 | 7.5e-17 | 208 | 244 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCgt++ Tp +Rrgp g++tLCnaCGl+++ kg+ Sevir.9G136800.1.p 208 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKGT 244 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 7.0E-10 | 67 | 102 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 14.818 | 67 | 102 | IPR010399 | Tify domain |
Pfam | PF06200 | 2.0E-12 | 70 | 101 | IPR010399 | Tify domain |
Pfam | PF06203 | 1.1E-14 | 136 | 176 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.364 | 136 | 178 | IPR010402 | CCT domain |
SMART | SM00401 | 8.0E-11 | 202 | 255 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.75E-11 | 206 | 252 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.6E-14 | 207 | 246 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.56E-15 | 207 | 263 | No hit | No description |
Pfam | PF00320 | 2.0E-14 | 208 | 244 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 208 | 235 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MPDADVDAEM RDAAAAAAAP AGDDGEDDTG EEDDDEDDID DEDEEEPTAP VPVPPVEPPV 60 PAPVSVLPGN PNQLTLLFQG EVYVFESVTP DKVQAVLLLL GRGELPPGST GMVLPNQNEN 120 KGYDDILRRT DIPAKRVASL IRFREKRKER NFDKKIRYAV RKEVALRMQR RKGQFAGRAS 180 LEGESPGPGC DPGSQSSGLD FVSRESKCQN CGTSEKMTPA MRRGPAGPRT LCNACGLMWA 240 NKGTLRSCPK AKVESPAVAI EQGGSDNKAL MAPKNDNVSA SNSEATSAAE TGAPKAP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G136800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU963754 | 0.0 | EU963754.1 Zea mays clone 272371 GATA transcription factor 25 mRNA, complete cds. | |||
GenBank | EU964966 | 0.0 | EU964966.1 Zea mays clone 282829 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982162.1 | 0.0 | GATA transcription factor 18 | ||||
Swissprot | Q10F25 | 1e-135 | GAT18_ORYSJ; GATA transcription factor 18 | ||||
TrEMBL | K4AC85 | 0.0 | K4AC85_SETIT; Uncharacterized protein | ||||
STRING | Si036492m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3460 | 37 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 1e-59 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G136800.1.p |
Publications ? help Back to Top | |||
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