PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G132800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 1545aa    MW: 167871 Da    PI: 4.0685
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G132800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57.3e-1110581080527
                          --SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH    5 lCrffartGtCkyGdrCkFaHgp 27  
                          +Crf++ +G C+yG++C+F+H++
  Sevir.9G132800.1.p 1058 NCRFYMLNGSCSYGSSCHFNHPQ 1080
                          7********************97 PP
2zf-CCCH29.41.4e-0911161139427
                          ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH    4 elCrffartGtCkyGdrCkFaHgp 27  
                          + C +++r+GtC+yG +C+F+H++
  Sevir.9G132800.1.p 1116 RKCTYYMRNGTCRYGKKCCFNHPE 1139
                          67********************96 PP
3zf-CCCH22.52.1e-0712511276227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHgp 27  
                           +++C+f +r+G Ck+ + C++ H++
  Sevir.9G132800.1.p 1251 ERPECPFLQRFGNCKFESACQYYHPK 1276
                          689*********************96 PP
4zf-CCCH28.91.9e-0913211347127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                          +++++C+f+ +tG Ck+ + CkF+H++
  Sevir.9G132800.1.p 1321 PGEPECPFYIKTGSCKFRADCKFHHPK 1347
                          5799*********************96 PP
5zf-CCCH21.54.1e-0714131439127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                          ++++ Cr+++++G Ck+ + C F+H++
  Sevir.9G132800.1.p 1413 PGEPDCRYYMQFGKCKFQSACIFNHPK 1439
                          5789*********************96 PP
6zf-CCCH36.95.9e-1214461472127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                          ++ + C+f+++tGtC++G+ C F+H++
  Sevir.9G132800.1.p 1446 WRPAACPFYMKTGTCQFGSACEFSHPK 1472
                          56789********************96 PP
7zf-CCCH185.1e-0615121537126
                          --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHg 26  
                          +++++C+++++ G+Ck+  +C F+H+
  Sevir.9G132800.1.p 1512 PGEPECSHYMKHGYCKFQKSCIFHHP 1537
                          5799*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.2E-510531080IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.95710531081IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-510571080IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-810581080IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-510591079IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-511121139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.72311121140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-611151140IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-711161139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-511181139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.42212491277IPR000571Zinc finger, CCCH-type
SMARTSM003560.07412501276IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-412511276IPR000571Zinc finger, CCCH-type
SMARTSM003560.001213201347IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.03313201348IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-413221347IPR000571Zinc finger, CCCH-type
SMARTSM003560.004714121439IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.85414121440IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-414141439IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-514441471IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-714451472IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.00914451473IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-514461474IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-914461472IPR000571Zinc finger, CCCH-type
SMARTSM003560.02315111538IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.13115111539IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1545 aa     Download sequence    Send to blast
MAGVEDEDEY KDALGAADPP PSSPSPTSKP KPAAAAGGGG GGLGRRLFAS IPLPASLSAA  60
IGRFSSPKPP APNVGLGLLL HAGPATPADG SGTPASDAAS AISSPHLPPL VSLQPQHGED  120
RVAGLGAGMG EEDLGLVPAE EQVWPTAEDR EKEGLAVDEC SANRNDFSLL GQEEGEQCQG  180
DELGAAVDGC MVQDQEEVVE QEGATEDCAA VVEDQSNNAA VEQCAGDETR AVKDDNAVEV  240
NEKVTEQEGA VSILDAAEDG VAVGSQEEEE DVVVAEQGED VISVQDQLEV VELCTGDQLR  300
TTTEDNAGRD QDLVKQEEAT EYYTTLEAVE QCTNDGSKEV KDGNIVEEEE RAVELEGAPG  360
LLDAAKDGTP VELQEEDVVV AEQEEDEDVI SVQDQHKVVD QCSGDQLITA TDDNAAQDQD  420
VMKHEGATEY YIAVEAVEQC TNDGSRAVKD GNVVEEKDKV AEQVVAVGIL YAAKDCATGE  480
SQEEGDVVVA EQSEDSISVQ DQHKVVELFT GNQLKASADD NAAQDQEVLE QEGATEYYTT  540
LEAIEECTND ESRVAKDGNV VEEKERPVKQ EGAVGVLNAA KDGFIVELQE EDVMVAEQCE  600
GDIFVRNQDK VVELCTSGQI KTTVVDNAAE GQEVVEEECA IVDRDAATDD IAVEDQEKEV  660
KQSAGDESRA TKDGNAVEVN EKMVDQEDVI DKHGVIKDGN GVVLLEENIV VVVEQGGDAI  720
SLPDVSNVEQ YTIDQLRATT DDNAAENQEI GEQGAVVEGV VTTDGIDIED QEKEVEHSSG  780
DELTSTKNEN GVEDNEKVDQ EDIIDKQGVI KDGSGVDSQE EDVVVTEQGG DGISVRDVGN  840
VVKQYTSDQR TTMEDNVVEC QEVVEKEGAV FERGATAGGT TVEDQDKEVE QSAGDESRAT  900
NDENGVEDAT SKQGAAKDGS GVESQEDEDV VPAEQGGVDI SVRDEGNVME QCTSDQQRTT  960
TDDNAAEDQE VVEQEGVVSI LGAAKVDIAV ESLQEEDIVV ADQVEDGVSV QDQDKVVEQC  1020
TSDQLRTRTY GYAEEDQEAR RENIGFSAGY PQRPGKLNCR FYMLNGSCSY GSSCHFNHPQ  1080
LKAKLEVSNF PSEQRNREVE FLELNRVGLP IREGARKCTY YMRNGTCRYG KKCCFNHPEQ  1140
VLDAQLHMPT GWDDTNLQSS PHSKKSTEHA TINDISSGLE ILPPNGSEIL PPNILRMLLP  1200
PQNVPPCTEE KEMKVKKDPD WSSASDDSDG CCSADSSGGP LCKQEHVDYP ERPECPFLQR  1260
FGNCKFESAC QYYHPKDKFP CRHHPKDKFP SRYHSKDKFQ SRYLPKRDPP LAELKVYPDR  1320
PGEPECPFYI KTGSCKFRAD CKFHHPKDLT PSMQGSASPK RSVAANEHHP AARIPSMQGP  1380
ASPKRLVANE HHPAARITLQ DHMYQQQKCP ERPGEPDCRY YMQFGKCKFQ SACIFNHPKD  1440
ILSSGWRPAA CPFYMKTGTC QFGSACEFSH PKDRCATTGE AIDDGTDNEH DFDTKSENVL  1500
QQQEKTIYPQ RPGEPECSHY MKHGYCKFQK SCIFHHPTDH LSNK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G132800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982130.30.0uncharacterized protein LOC101775251
TrEMBLA0A368SGC10.0A0A368SGC1_SETIT; Uncharacterized protein
STRINGSi033903m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147291820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.13e-35floral homeotic protein (HUA1)