PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G128200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 432aa    MW: 44265.6 Da    PI: 6.5071
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G128200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00035365387123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ykC+ Cg+ +++   L  H+r+H
  Sevir.9G128200.1.p 365 YKCKVCGTECPTGRALGGHMRKH 387
                         9*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.31E-5201223No hitNo description
PfamPF139120.0015201219IPR007087Zinc finger, C2H2
SMARTSM003557201223IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280203223IPR007087Zinc finger, C2H2
SuperFamilySSF576671.31E-5360387No hitNo description
PfamPF139126.4E-6365389IPR007087Zinc finger, C2H2
PROSITE profilePS501579.577365392IPR007087Zinc finger, C2H2
SMARTSM003550.0086365387IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280367387IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MVVVVEGEEY YSDSDSDDDV DRYVFLARPP APAAGRRHAE DDRGASSAND DDDGDGDATG  60
DEEEPERGGG RTKRRPLDRE ILDGAPPPPP PKRARLELIA PPFAQTPPSG SGSETESDSD  120
SAALPCVDVA GESGSEGSHD HEKVHGRRAP GKGGEANNAT KRKRGACGKR GRGPGCEADG  180
DRAVTAAAKA GAPPAATSGR FLCNLCERCF DSFQALGGHV LGHRKKAKVA IAAAASLDVD  240
DAGGVIGNCK EEAAVVEANE ETANGIAQAG KMVAVAARRG KANGGGGCHD KIKTVDGVAE  300
HRDDVGFGNK GNGIAVSSHC FTNGGNSRCN EKTGIGAAIS NQKAVVGSCH EGANGDGNGV  360
RRTLYKCKVC GTECPTGRAL GGHMRKHRKR PPPGGDGGGG EGRSPSPATD GDFQIPLSRL  420
FVPRENTIGL I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G128200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644592.13e-73uncharacterized protein LOC103625972
TrEMBLA0A368SFZ20.0A0A368SFZ2_SETIT; Uncharacterized protein
STRINGSi038591m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1861322