PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G122200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | TCP | ||||||||
Protein Properties | Length: 370aa MW: 39474.2 Da PI: 7.993 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 160.9 | 6.8e-50 | 113 | 273 | 1 | 136 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 aa++kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LGfdk+skt++WLl+ +k ai+e++ + +++sec e++sss s++ + ++ Sevir.9G122200.1.p 113 AAARKDRHSKICTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNTSKSAIQEIMTD--DASSECvEDGSSSLSVDGKPNPae 201 589**************************************************************..666679999999999995555566 PP TCP 89 .......................kaaksaakskksq.ksaasalnlakesrakarararertrekmriknkl 136 ka+k a+++k+++ +s +++ ++ke+rakar+rarert+ek+r+++++ Sevir.9G122200.1.p 202 llgggdqqpnkgngrsgegkkpaKARKPATTPKPPRkSSVNAHPVPDKETRAKARERARERTKEKHRMRWVK 273 777777777788999999999974444444555554055555666777*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.9E-46 | 115 | 269 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 35.147 | 116 | 174 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.593 | 249 | 266 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MFPFCDSSSP MDLPLYQQLQ LSPPSPKPDQ STGFFYYPCS PPFAAADASF HLSYQLGSAA 60 AATPPQAVID SPELPLQPVM EQAPAPAPAA ELDLDAACAN AQGAGAGLDR AAAAARKDRH 120 SKICTAGGMR DRRMRLSLDV ARKFFALQDM LGFDKASKTV QWLLNTSKSA IQEIMTDDAS 180 SECVEDGSSS LSVDGKPNPA ELLGGGDQQP NKGNGRSGEG KKPAKARKPA TTPKPPRKSS 240 VNAHPVPDKE TRAKARERAR ERTKEKHRMR WVKLASAIDV EAAAASVARD RPSSNNLSHH 300 ASSNMACAAA ELEERCSSTL NNGGRMQEIT GSSDVILPFG NGGYGAGNYY CQEQWDLGGV 360 VFQQNSRFY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Involved in apical dominance. Represses the growth of axillary organs (e.g. lateral branches), but enables the formation of female inflorescences. Regulates the number and length of axillary branches. {ECO:0000269|PubMed:12524360, ECO:0000269|PubMed:16642024, ECO:0000269|PubMed:17947410, ECO:0000269|PubMed:8536981, ECO:0000269|PubMed:9087405}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G122200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF694124 | 0.0 | EF694124.2 Pennisetum glaucum isolate Tb46 teosinte-branched1 (Tb1) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982035.1 | 0.0 | transcription factor TEOSINTE BRANCHED 1 | ||||
Swissprot | Q93WI2 | 1e-180 | TB1_MAIZE; Transcription factor TEOSINTE BRANCHED 1 | ||||
TrEMBL | K4AII0 | 0.0 | K4AII0_SETIT; Uncharacterized protein | ||||
STRING | Si038692m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7253 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 1e-24 | TCP domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G122200.1.p |
Publications ? help Back to Top | |||
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