PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G114000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 317aa MW: 36269.1 Da PI: 5.441 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 56.7 | 8.1e-18 | 1 | 82 | 10 | 90 |
FAR1 10 vGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +GF+vr++ s s ++g++++ +f+C+keg + e+++ ++k++r+ra t+ gCka++++ k++++kw+v+kl l H+Hela Sevir.9G114000.1.p 1 MGFEVRIRLSCCSPKDGTFVMWRFNCTKEGADPCEENNnENKRKRNRAATKEGCKASFEIVKREQDKWVVSKLFLAHTHELA 82 7******************************9988877467778899*********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.2E-16 | 1 | 82 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MGFEVRIRLS CCSPKDGTFV MWRFNCTKEG ADPCEENNNE NKRKRNRAAT KEGCKASFEI 60 VKREQDKWVV SKLFLAHTHE LAAVQDEVHY IQSNSEVVVL AKTSVLQGNW IAPTMNPQLG 120 ELGRNFEELS PNNQEMIEPC RCDFGLDDTQ KLLGYFKRLN TENPTFSYAF QVDKNDCLTH 180 AFWADAKVRT SYCYFGDGVR LETSFVENDN FLPLVLLTAM GSHHPTSLAT SYIEAIGSAA 240 AKVFPQTHLL YCTSQILNRC KENLVNVYSR CASFEEEFVV CIHEPETTEI FESSWKKILD 300 KFDLADNLWL QYLYRI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G114000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006650502.1 | 1e-158 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_015691162.1 | 1e-158 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A368SFQ9 | 0.0 | A0A368SFQ9_SETIT; Uncharacterized protein | ||||
STRING | OB03G39100.1 | 1e-157 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 4e-41 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G114000.1.p |