PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G107200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TALE
Protein Properties Length: 357aa    MW: 38985 Da    PI: 6.4567
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G107200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.45.6e-092683022155
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         + +yps+ e+  LA+++gL+++q+ +WF N+R ++
  Sevir.9G107200.1.p 268 RWPYPSEMEKVALAESTGLEQKQINNWFINQRKRH 302
                         569*****************************885 PP
2ELK31.93e-11222243122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELK++Ll+KY+g+LgsL++E++
  Sevir.9G107200.1.p 222 ELKRHLLKKYKGCLGSLRKELC 243
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.5E-1771115IPR005540KNOX1
PfamPF037902.6E-1773114IPR005540KNOX1
SMARTSM012568.1E-25123174IPR005541KNOX2
PfamPF037915.9E-20129172IPR005541KNOX2
SMARTSM011883.6E-6222243IPR005539ELK domain
PfamPF037891.0E-8222243IPR005539ELK domain
PROSITE profilePS5121310.65222242IPR005539ELK domain
PROSITE profilePS5007112.73242305IPR001356Homeobox domain
SuperFamilySSF466891.07E-19244319IPR009057Homeodomain-like
SMARTSM003891.2E-12244309IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-26247307IPR009057Homeodomain-like
CDDcd000869.64E-13254306No hitNo description
PfamPF059205.9E-16262301IPR008422Homeobox KN domain
PROSITE patternPS000270280303IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEDLSDLGAH GHPGAAARPP LCPLPSSSKV SVQVYTIPSS TAGGGARAQV VAPAGHASSG  60
SGHGGRVGDL DPVKAKIVSH PRYHGLLTAF LDCHKVGCPP EAAEEIAAAA REREAWQRAA  120
AGDAHTTRPD PELDQFMESY IELLVAWKEE LSRPLREAKE FLTTVESQLN SIASTGPPLG  180
APISADDKIG LDNLSDEDDQ EEGSGMESEE ALGIDSCSDD KELKRHLLKK YKGCLGSLRK  240
ELCKKRKKGK LPKEARQKLL SWWELHYRWP YPSEMEKVAL AESTGLEQKQ INNWFINQRK  300
RHWKPSEEMQ FAVMDGFHPV PPNAAAALYV DARLVGAAPA MFYARPDHGA HDLWHN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237246LRKELCKKRK
2243247KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G107200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9649490.0EU964949.1 Zea mays clone 282742 KNOX1 domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981910.10.0homeobox protein knotted-1-like 7
SwissprotQ948L51e-103KNOS7_ORYSJ; Homeobox protein knotted-1-like 7
TrEMBLA0A368SFH60.0A0A368SFH6_SETIT; Uncharacterized protein
STRINGSi036193m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150631819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.13e-81KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y,Aoki Y,Matsuoka M
    A loss-of-function mutation in the rice KNOX type homeobox gene, OSH3.
    Plant Cell Physiol., 2002. 43(1): p. 44-51
    [PMID:11828021]
  2. Sato Y,Fukuda Y,Hirano HY
    Mutations that cause amino acid substitutions at the invariant positions in homeodomain of OSH3 KNOX protein suggest artificial selection during rice domestication.
    Genes Genet. Syst., 2001. 76(6): p. 381-92
    [PMID:11922107]