PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G101100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | GATA | ||||||||
Protein Properties | Length: 309aa MW: 32982.3 Da PI: 8.42 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 47.5 | 2.5e-15 | 203 | 239 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCg ++ Tp +Rrgp g+++LCnaCGl+++ kg+ Sevir.9G101100.1.p 203 CQNCGISSrlTPAMRRGPAGPRSLCNACGLMWANKGT 239 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 1.3E-7 | 70 | 105 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 14.679 | 70 | 105 | IPR010399 | Tify domain |
Pfam | PF06200 | 2.4E-11 | 72 | 104 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.374 | 132 | 174 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.7E-15 | 132 | 172 | IPR010402 | CCT domain |
SMART | SM00401 | 2.6E-10 | 197 | 251 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.33E-10 | 200 | 255 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.5E-14 | 201 | 241 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 203 | 230 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.20E-12 | 203 | 249 | No hit | No description |
Pfam | PF00320 | 4.6E-13 | 203 | 239 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MCTVHVRGSC PSLRTCAQTQ PVRASPPSDP QPMAAEPAAD DHDPRPTPAD GPAAAGGGDA 60 SASAAAEALM SAASEQLTMV YQGDVFVFDP VPPQKVQAVL LVLGGYEVPS GLVNMTVPTA 120 NDEKSTTVAA RRVASLMRFR EKRKERCFDK RIRYNVRKEV AQKMKRRKGQ FAGRSDFGDG 180 ACSSVACGSP PNGEDDHFRE THCQNCGISS RLTPAMRRGP AGPRSLCNAC GLMWANKGTL 240 RSPINAPKMT LQHPANPSKT GDTDDKNSTV LPVEHNQATV KTDSGMMPEQ EQKLDILPPT 300 KEDIKSVS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G101100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU958286 | 0.0 | EU958286.1 Zea mays clone 1683206 GATA transcription factor 25 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004981867.1 | 0.0 | GATA transcription factor 19 | ||||
Swissprot | Q0DNU1 | 1e-141 | GAT19_ORYSJ; GATA transcription factor 19 | ||||
TrEMBL | K4ACZ0 | 0.0 | K4ACZ0_SETIT; Uncharacterized protein | ||||
STRING | Si036747m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3460 | 37 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 1e-53 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G101100.1.p |