PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G078100.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Dof

Protein Properties

Length: 443aa MW: 45721.8 Da PI: 9.1272

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G078100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.2	7.6e-38	148	205	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++ l+cprC+s+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk + Sevir.9G078100.1.p 148 QAPLRCPRCNSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKPRP 205 66789**************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.2E-31	150	204	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.096	151	205	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	8.0E-27	151	202	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	153	189	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MACPFSSPSS NFFISHTPVP LPHPTTHPLI HTTKQEPESN HTTPPLPSPR KNPSPSASRS 60 LFELEFSPSI TMIQELLGGA AMDQLKSVND GNPASLPMLL HPTVSNPSPT SSSSTSSRSS 120 AQQPHQQQRS TSATSSPQGQ QQVQGAEQAP LRCPRCNSSN TKFCYYNNYN LTQPRHFCKT 180 CRRYWTKGGA LRNVPIGGGC RKPRPMPTPV AKPALSCKAV GGAPSLGLGV GLGMGAGPVP 240 WASSQQAAAA QLMALLNSAR GVQGGGGHGG SNMHRLLGLD SMAHLPIHVL PGAGNASGAP 300 ASLWPPAASR PIPTPPPHMD SQLGMGPLGQ HDVLSTLGLK LPSPSPSLAA SYYSDQLHAV 360 VSSAAGRPHE YDAPGTTSLP CTTAAASLPP PASSVSAALS SATVGLDLPP ISLPAPEMQY 420 WAGPAAMSMA WPDLPTPNGA FP*

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MACPFSSPSS NFFISHTPVP LPHPTTHPLI HTTKQEPESN HTTPPLPSPR KNPSPSASRS  60
LFELEFSPSI TMIQELLGGA AMDQLKSVND GNPASLPMLL HPTVSNPSPT SSSSTSSRSS  120
AQQPHQQQRS TSATSSPQGQ QQVQGAEQAP LRCPRCNSSN TKFCYYNNYN LTQPRHFCKT  180
CRRYWTKGGA LRNVPIGGGC RKPRPMPTPV AKPALSCKAV GGAPSLGLGV GLGMGAGPVP  240
WASSQQAAAA QLMALLNSAR GVQGGGGHGG SNMHRLLGLD SMAHLPIHVL PGAGNASGAP  300
ASLWPPAASR PIPTPPPHMD SQLGMGPLGQ HDVLSTLGLK LPSPSPSLAA SYYSDQLHAV  360
VSSAAGRPHE YDAPGTTSLP CTTAAASLPP PASSVSAALS SATVGLDLPP ISLPAPEMQY  420
WAGPAAMSMA WPDLPTPNGA FP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G078100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU969749	0.0	EU969749.1 Zea mays clone 335113 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981654.1	0.0	dof zinc finger protein 4
TrEMBL	A0A368SE80	0.0	A0A368SE80_SETIT; Uncharacterized protein
STRING	Si039685m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7710	31	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	3e-31	Dof family protein

Link Out ? help Back to Top
Phytozome	Sevir.9G078100.1.p