PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G068600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 1209aa    MW: 135841 Da    PI: 6.2552
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G068600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR124.68.2e-08128187148
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............t 48 
                         +fY  Y+++vGF+ r+ ++++s  +ge ++++f C +  ++++++k             t
  Sevir.9G068600.1.p 128 EFYYGYGERVGFKARTGSNRRSGGDGEKIMQRFLCWRGNYANRRSKGketeevveaaaaT 187
                         6************************************99999888874444444444432 PP
2FAR175.88.6e-24436520188
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                         +fY +YA   GFsvrk    k+ +n  +++r +vCskeg+r+++ ++  +++++r+etrtgC+a++++k +++gk++vt+++++HnH+
  Sevir.9G068600.1.p 436 EFYVNYAGAEGFSVRKGCLDKTAKNV-TKSRAYVCSKEGFRTKSISS--ESKKPRPETRTGCQAHMTIKITESGKYVVTEFVSDHNHD 520
                         6********************95555.99**************9988..99************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.9E-5128186IPR004330FAR1 DNA binding domain
PROSITE profilePS5115210.477308368IPR001289Nuclear transcription factor Y subunit A
PfamPF031013.5E-21436520IPR004330FAR1 DNA binding domain
PfamPF105517.1E-23622713IPR018289MULE transposase domain
PROSITE profilePS509669.99889936IPR007527Zinc finger, SWIM-type
SMARTSM005758.4E-7911938IPR006564Zinc finger, PMZ-type
PfamPF044343.6E-5912933IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1209 aa     Download sequence    Send to blast
MVDRAAAPAE AASSDPPPEP GAPPRQAGTA HEKEDAPAAA AAAGPPPPPQ QAGDADEEDG  60
ASASPAGGPG ERCLAMMEVV AKDGAGVKWK VSRLVVEHNH ELQVAPGEVA ATVPALGMEF  120
DSVDAAKEFY YGYGERVGFK ARTGSNRRSG GDGEKIMQRF LCWRGNYANR RSKGKETEEV  180
VEAAAATAAE KRKREPYRTR SRNPAKKDAE IIEVSKGVGM GGAENGRGSR RGRSKKGMVE  240
QEESVAGLEV EKDVVEDASA PPPPDKEAEE GEGEDQEGVE EEVQVEVKRG RGRPRKAVAD  300
DNAEQARALR ELGVRASQYN NEERKKILTK YLSKRQSRPA SSRPTKIASR QALAERRKRG  360
DGGRFLSSEG QQPSGQPSER RSKRLEKQSL KMEEKAESKE DEIIEAEPDP EEEVVAGPGG  420
EPKIGMVFLD EDKAYEFYVN YAGAEGFSVR KGCLDKTAKN VTKSRAYVCS KEGFRTKSIS  480
SESKKPRPET RTGCQAHMTI KITESGKYVV TEFVSDHNHD REAPLVDIQI LKSQKLLAKV  540
QQPPDPPKVV LIPNEYKNYT RTKCIKDMQL GDAQAISEYL RRMKGENPSF FYAIQVDEDD  600
QFTNVFWADF KSIMDYNYFG DVVCIDTRYC TSDYGRPLLL FIGVNHHKQP IIFGTALIYD  660
DSVQSFRWLF ETFKSAMSGK QPKTVLTDQS TELSDAISSV WPGTTHRFSL LHLYLTASKV  720
LRDNFQASET FALDFSRWLY DYEEEDFISS WEILSEKYNL KDNEWLNKLY EDRERWGSPY  780
GRDTFCADIA ATLRSDNTDT ILKDLLKPEV DLQNFFNSYN KFLEEKRLAE QQADYLGAQM  840
TQRVAPLRLL WQAANSYTPT LFEMFRMEFE QISNCMVFSC GEIGPISEYQ VTAKDKPRGQ  900
FVRFDSTECV VVCSCKKFEF LGLPCCHVLK ILELRNIKEL PPHYILKRWR KDARSESPGE  960
SYGYATIEED PRFSLSRRYN TLYRTLYKIA EKSSESIEAY AFLENQYEQL VEQVEVLLQA  1020
RLHDKSSLNT ILKGHQPHLL QSEVSNSEPR RVTAKKNKNV EPRRQQQSPL DSNKKKKARQ  1080
GLLEPEEIEI PLRAVPPTVS NDIPSHLRTP TNQFLAPSHI MQAPYVAQQF GLGSLQGFPG  1140
MSAFGQIQEP APLHQHSHLQ PPPFHNGPQI PQAPPPDIQS LQFLSSNPQL GHQTTDQGQY  1200
TIPVWDFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1287295KRGRGRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G068600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981561.40.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A3L6TUH10.0A0A3L6TUH1_PANMI; Protein FAR1-RELATED SEQUENCE 5-like
STRINGSb01g006380.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-103FAR1-related sequence 5