PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G064100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TCP
Protein Properties Length: 392aa    MW: 40076.1 Da    PI: 9.6129
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G064100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1164.9e-36721962126
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssasn 84 
                          g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LGfd++sk+ieWL+++a  ai++l+ +        +         +     a+ 
  Sevir.9G064100.1.p  72 SGGKDRHSKVYTAKGIRDRRVRLSVPTAIQFYDLQDRLGFDQPSKAIEWLINAASDAIDKLPALdpaafaalP---------GPADADAAG 153
                         689*************************************************************333333331.........222222222 PP

                 TCP  85 sssgkaaksaa.kskksqksaasalnlakesrakarararert 126
                         ++ +++++++   s+ s++s+ s l+l+++      ar re t
  Sevir.9G064100.1.p 154 NKVKQQQQQHSgGSSTSETSKGSELSLSRSDGRGGAARDREVT 196
                         2222233333335666666666667777766667777777654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-3473201IPR005333Transcription factor, TCP
PROSITE profilePS5136932.7774132IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MEAVGDGGAA GAGDGAPGRS QQQGAKRGRG GGVRGSGSEA DAAAAAWGQP PALLPPPQGP  60
GAGSRIYRVR ASGGKDRHSK VYTAKGIRDR RVRLSVPTAI QFYDLQDRLG FDQPSKAIEW  120
LINAASDAID KLPALDPAAF AALPGPADAD AAGNKVKQQQ QQHSGGSSTS ETSKGSELSL  180
SRSDGRGGAA RDREVTVAST SAQAASFTEL LTGVASAGSI SAAEHKHSWQ QQQPNVSAAA  240
AADCVGIAHP GKGAHGLSTH AFSAPIKFGN APPFGMVPAQ PFNFTSSVEM PHFSLGQDAL  300
AASSASAGDY SLNFSMSSGF LGANRGTLQS NSQSNFSGYH HQQLQRLDGP FLFGHAAAAA  360
HPASENQLTA SAALQLWDGF RHSGMKEKSK N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-2679133155Putative transcription factor PCF6
5zkt_B4e-2679133155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00063PBMTransfer from AT4G18390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G064100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9565950.0EU956595.1 Zea mays clone 1567541 TCP family transcription factor containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986203.10.0transcription factor PCF6
SwissprotQ10CE81e-113PCF6_ORYSJ; Transcription factor PCF6
TrEMBLK4AB180.0K4AB18_SETIT; Uncharacterized protein
STRINGSi036075m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-32TCP family protein