PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G039900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 444aa    MW: 48017.9 Da    PI: 6.9442
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G039900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.13.3e-272233553128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......tksgyWkatg 87 
                         +G+rF+Ptdeel+ +yL+ k +g+k+++ +++k++d+y+ +P++ ++++   +  wy Fs+r++ky++g r+ r+      ++ gyWk+  
  Sevir.9G039900.1.p 223 AGVRFQPTDEELI-FYLRLKHAGHKMPV-DFFKDFDVYHEHPETSRAACGVVNGCWYAFSPRNRKYKNGGRPARSvfdasgVQVGYWKSNT 311
                         7************.**************.99*************98666666679*******************7688888889******* PP

                 NAM  88 kdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         k  +vl+    +g+lvg  ++L+f+ g++pkg++t W m+ey++
  Sevir.9G039900.1.p 312 KLAPVLAGgkaDGALVGEVTSLTFHLGQQPKGTQTPWKMKEYAI 355
                         ******976666667***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100534.108221380IPR003441NAC domain
SuperFamilySSF1019414.32E-35223380IPR003441NAC domain
PfamPF023658.8E-15223354IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MAEPPYYWHP QTQPGFPPRF APVPLPFAQG VMPPPVPVPV QITRAEPSYY HPQIQGSVAS  60
GSAAEAAAIV HAVPDTQKAQ EATAPAHRRR GRPRKTDTAA VAAAKPVIKK PKRATVRSSR  120
AAAPQPTGSS VAGSATMAGQ VQIHQQQDQA ASSVVEFQVQ HPDQAASVIA VATSSQQTAP  180
CTTNPMALLC DQEQWQLQPS CSNILSAGDQ AAAAGPYADT SVAGVRFQPT DEELIFYLRL  240
KHAGHKMPVD FFKDFDVYHE HPETSRAACG VVNGCWYAFS PRNRKYKNGG RPARSVFDAS  300
GVQVGYWKSN TKLAPVLAGG KADGALVGEV TSLTFHLGQQ PKGTQTPWKM KEYAIPQNQH  360
APDGSAMRLN DWVVCKLFYK ERVIKNAAAE EDQLSEAGEN DVWAEGDEGT WRVPVVQTLG  420
NSEQDLCVDY QIETNADDYL PWI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-2322438118169Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18894RRGRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G039900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK4AKM00.0K4AKM0_SETIT; Uncharacterized protein
STRINGSi039443m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131302130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.12e-26NAC domain containing protein 2