PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G032600.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Dof

Protein Properties

Length: 426aa MW: 43237.6 Da PI: 9.2512

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G032600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.8	1.2e-38	129	189	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e lkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+++ Sevir.9G032600.1.p 129 PEPGLKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTK 189 56789*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-39	113	187	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.0E-32	133	187	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.609	133	187	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	135	171	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MVFSSVPVYL DPPNWNQHQH QQQQQQAHHG QLPSGGGGGG GGGGGVETHA HHHQQHQHQH 60 QHQHQHQHQH HQLPPMPPPG ALMAPRPDME TIAVAASGGG GGGGGPTGGS AVRPGSMTER 120 ARLAKIPQPE PGLKCPRCES TNTKFCYFNN YSLSQPRHFC KTCRRYWTRG GALRNVPVGG 180 GCRRNKRTKS SKSSSSSAAA SASATGGGTS SSTSSTATGG SSAAAAVMPP QGQLPFLASL 240 HHPLGGDHYS TGASRLGFPG LSSLDPVDYQ LGGAGGGGGT AIGFEQWRLP QIQQFPFLSR 300 PDAVPPPMSG IYPFDVEGHG DPAGFAGQML GGSKVPGSAG LITQLASVKM EDNPPSTAMT 360 SLPREFLGLP GNLQFWGGGG NGGASGNNGG TANTGGGGGG SGASAPGSSW VDLSGFNSSS 420 SGNIL*

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MVFSSVPVYL DPPNWNQHQH QQQQQQAHHG QLPSGGGGGG GGGGGVETHA HHHQQHQHQH  60
QHQHQHQHQH HQLPPMPPPG ALMAPRPDME TIAVAASGGG GGGGGPTGGS AVRPGSMTER  120
ARLAKIPQPE PGLKCPRCES TNTKFCYFNN YSLSQPRHFC KTCRRYWTRG GALRNVPVGG  180
GCRRNKRTKS SKSSSSSAAA SASATGGGTS SSTSSTATGG SSAAAAVMPP QGQLPFLASL  240
HHPLGGDHYS TGASRLGFPG LSSLDPVDYQ LGGAGGGGGT AIGFEQWRLP QIQQFPFLSR  300
PDAVPPPMSG IYPFDVEGHG DPAGFAGQML GGSKVPGSAG LITQLASVKM EDNPPSTAMT  360
SLPREFLGLP GNLQFWGGGG NGGASGNNGG TANTGGGGGG SGASAPGSSW VDLSGFNSSS  420
SGNIL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G032600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981250.1	0.0	dof zinc finger protein DOF2.4
TrEMBL	K4AAI9	0.0	K4AAI9_SETIT; Uncharacterized protein
STRING	Si035896m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4893	29	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.2	8e-45	OBF-binding protein 3

Link Out ? help Back to Top
Phytozome	Sevir.9G032600.1.p