PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G028700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 314aa    MW: 34572.4 Da    PI: 5.5609
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G028700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM23.31.7e-072914029127
                 NAM  29 eleevikevdiykvePwdLpk..........kvkaeekewyfFskrdkkyatgk....rknr.atksgyWkatgkdkevlskkgelvglkk 104
                         ++ ++++++d++++ P dL +             + +  wy +++++ k+a+g+    r++  a  +  W++  + k+v+  +g    + +
  Sevir.9G028700.1.p  29 DF-SFVHRADVCSAAPADLVAnlepvpgtdlDKGGYNAIWYLYCPKRFKNAKGDhsghRQRSiAGGDTCWHSESSPKPVKGLDG---ATVR 115
                         33.67999***********744778887754222344589******99999655333255554445778**********88444...5667 PP

                 NAM 105 tLvfy..kgrapkgektdWvmheyr 127
                          L +   +g++++ ++  W+m ey 
  Sevir.9G028700.1.p 116 NLSYGrkEGSSRSFNRMGWCMLEYD 140
                         899985567888899********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.4392158IPR003441NAC domain
SuperFamilySSF1019414.32E-1327158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MAAEDRGFRT RDDASSIALL SSIRSGVADF SFVHRADVCS AAPADLVANL EPVPGTDLDK  60
GGYNAIWYLY CPKRFKNAKG DHSGHRQRSI AGGDTCWHSE SSPKPVKGLD GATVRNLSYG  120
RKEGSSRSFN RMGWCMLEYD DQHGGGGDDH VLCKIYRSSS SLARAKSKPT NQRLSGCKRK  180
ATSDHAQSLP SKMSHAQACS FVDLDFLDHV QQPLFTDDKM AMLESLFPAE EEQFQHNTQP  240
LLPAEEQQFL QHNTQSLLPA EEQQFQFEDS TRFTIGELLG YDENVDEFMM SRCCGTPTAT  300
APPDAGLFEG LAF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G028700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463549.12e-45uncharacterized protein LOC8079646
TrEMBLA0A368SCL50.0A0A368SCL5_SETIT; Uncharacterized protein
STRINGSi039417m1e-165(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4574632