PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G025200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 425aa    MW: 46079.1 Da    PI: 5.0958
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G025200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM29.91.6e-092512532127
                 NAM  32 evikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgk....rknr.atksgyWkatgkdkevlskkgelvglkktLvfykgrapk 115
                         +++++vd++++ P+dL +  + + +++ wy ++ ++ k+a+g+    r++  a+++  W++    k+v+   ++  g+   L + +++ ++
  Sevir.9G025200.1.p  25 HFVHHVDVCSAAPEDLVAdlEPAPGTSVWYLYCVKKYKSAHGRpgghRQRAiAASDTCWHSEAGAKDVKG--SQGGGTVCNLSYGRKDGRS 113
                         4699************85233344778*********9999654444266556677999**********87..66689999******999** PP

                 NAM 116 gektdWvmheyr 127
                          ++  W+m ey 
  Sevir.9G025200.1.p 114 FTRLGWCMMEYD 125
                         ***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.8431141IPR003441NAC domain
SuperFamilySSF1019414.18E-1421141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MAAEDTGDDA SIALLHRLRA GATVHFVHHV DVCSAAPEDL VADLEPAPGT SVWYLYCVKK  60
YKSAHGRPGG HRQRAIAASD TCWHSEAGAK DVKGSQGGGT VCNLSYGRKD GRSFTRLGWC  120
MMEYDDATGG GDHVLCKIYR SPRAQGKPSS AASKTSSGSK RKAGGEHTEA RPAKLLHEQD  180
TFFTNDYAMP STVAQVNVGG EEEQHLSTQD GEFVQTMYGL LPSVVAQINV EEWIRGAEMF  240
GGDEEQQSSK PEQDDWSVKD YLLAPETTSG EASGVPATLT PPDDADLFDV ELDSEFSVLQ  300
EQHTWQMQQP HAAEADPMAE FAHSLQTPRA MAMALIRRTE DSVVLVREVR LRGSWMPPAP  360
WRRPGAPSGA WWSTPAGSSS EERGDVVTAS FEVPVRRCRR AADSYLLVAA GAGFLYCSEL  420
HHDA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G025200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368SCE00.0A0A368SCE0_SETIT; Uncharacterized protein
STRINGSi039285m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4574632