PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G017500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 375aa    MW: 41540.1 Da    PI: 4.7576
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G017500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.13.4e-102512532127
                 NAM  32 evikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgk....rknr.atksgyWkatgkdkevlskkgelvglkktLvfykgrapk 115
                         +++++ d++++ P dL    + + +++ wyf++ ++ k+++g+    r++  a+++  W++    kev+   +e  g+   L + +++ ++
  Sevir.9G017500.1.p  25 HFVHHXDVCSAAPXDLVXdlEPAPGTSXWYFYCVKKYKSTHGRpgghRQRAiAASDTCWHSEAGAKEVKG--SEGGGTVCHLSYGRKDGRS 113
                         469999**********74234444788*********9999644444266556677999**********88..666799999****999999 PP

                 NAM 116 gektdWvmheyr 127
                          ++  W+m ey 
  Sevir.9G017500.1.p 114 FSRLGWCMMEYD 125
                         9**********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.6531141IPR003441NAC domain
SuperFamilySSF1019411.96E-1421141IPR003441NAC domain
PfamPF023651.8E-445124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MAAEDTGDDA SIALLHRLRA GATVHFVHHX DVCSAAPXDL VXDLEPAPGT SXWYFYCVKK  60
YKSTHGRPGG HRQRAIAASD TCWHSEAGAK EVKGSEGGGT VCHLSYGRKD GRSFSRLGWC  120
MMEYDDATGG SDYVLCKIYR SPRAQVKPSS AASKTSKRKA GGEHPEARPV KLFHEQDTFF  180
FTDDYAVPST VAQVNVGGEE EQHCRSMLPA EEHCVDLDFL DHDVLPLTDD EMAILESLLP  240
AEEQQFLQHN TQSLLPAEEQ QFLQHNTQPP LPAEDQQFLQ HNTQSLLPAE EQQFLQHSTQ  300
PPLPAEEQQF LQHNTQSLLA AEEQQFQFED STQFTIGKLL GDDVNVYEFM ISRCCGTPTA  360
MAPPDAGFFH GLAF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G017500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK4AIV80.0K4AIV8_SETIT; Uncharacterized protein
STRINGSi038820m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4574632