PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G015600.8.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 821aa    MW: 92608.4 Da    PI: 5.3782
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G015600.8.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.22.8e-1880164191
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                         +fY++YA ++GF v+++ks+ + + g + +  +vC+k+g+ +e+        + r++ +t+C+a+++ +++ dg  ++t+++leHnH+l+p
  Sevir.9G015600.8.p  80 NFYKRYALRTGFGVCVKKSSFT-KAGLCRRLVLVCNKWGNGKEDACY-----QARPTAKTNCQATVVARLWGDGLLHLTDVNLEHNHALNP 164
                         6*****************9998.6777****************9999.....999*********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-1680164IPR004330FAR1 DNA binding domain
PfamPF105518.4E-28267359IPR018289MULE transposase domain
PROSITE profilePS509669.05548584IPR007527Zinc finger, SWIM-type
SMARTSM005750.0027559586IPR006564Zinc finger, PMZ-type
PfamPF044341.9E-4560580IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 821 aa     Download sequence    Send to blast
MMEVGLNPGE ELDYGGNQED DDDAGDISPG SKELAAMVEA AAAAESVELD DGAAASAAQY  60
GDDRTPRDGM VFKSYEEVLN FYKRYALRTG FGVCVKKSSF TKAGLCRRLV LVCNKWGNGK  120
EDACYQARPT AKTNCQATVV ARLWGDGLLH LTDVNLEHNH ALNPSAARFL RCYKTLPSGM  180
SKDLVVRAAR GECSATGDID VPIFDDWGRL KIGEADVVAI NSFFADMQAK LPNSFYVMDF  240
YVEGHLRSVL WADSRSRAAY QYFDDAILID TTCLRNKYHV PLVSFLGVNN HGQLVLLGCG  300
LLSDESTESF LWLFKSWLTC MKGRSPNAVV TDECVAIKAA VREVFPKTRH RISDWHVLRS  360
VSEKLGELPE YEAMRTELET VIYDSLSDDE FEARWKNWID RFGLQDNEWI TFLYENRHLW  420
APAFLKDAFW AGLCTFSQRE SPSAFFEDSI NSETTLVSFL DSYMILLENK YKMEQQDDFD  480
SSNSSRVVIS KYPMEEQLSR LYTLNMFIRF QDELKATMHC QVQLDGSASS FIVIDLTEPA  540
TEMLNKKYEV VHCMAANKME CNCGLFQFCG IICRHALSVL KWQQVYDILP CYVLSRWRSD  600
FKLLHYSDNP SKDLATSNHV ERYDYISLQF LRLVEIGMSS DEKYRHAVRL IKDIKETLLD  660
DNLCRDLEQK LTPAERAIVN GDNHTQPGSS EGGPAKKRRG RPPKKSKEIS VDSMDSLLVS  720
TDVTQKGAFH SSSTASNLGS HVRTHGVVDL MEEVNPSELS FDSRYGVQSG HPHNFGNQLH  780
AGNTLQFGQP TSAAEHSRVQ WVYPNSMYQD DQVPYGRRTS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G015600.8.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698466.10.0protein FAR1-RELATED SEQUENCE 6
RefseqXP_012698467.10.0protein FAR1-RELATED SEQUENCE 6
RefseqXP_012698468.10.0protein FAR1-RELATED SEQUENCE 6
TrEMBLK4A5X20.0K4A5X2_SETIT; Uncharacterized protein
STRINGSi034276m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.11e-120FAR1-related sequence 8