PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.9G015600.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 821aa MW: 92608.4 Da PI: 5.3782 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 58.2 | 2.8e-18 | 80 | 164 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA ++GF v+++ks+ + + g + + +vC+k+g+ +e+ + r++ +t+C+a+++ +++ dg ++t+++leHnH+l+p Sevir.9G015600.3.p 80 NFYKRYALRTGFGVCVKKSSFT-KAGLCRRLVLVCNKWGNGKEDACY-----QARPTAKTNCQATVVARLWGDGLLHLTDVNLEHNHALNP 164 6*****************9998.6777****************9999.....999*********************************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.7E-16 | 80 | 164 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 8.4E-28 | 267 | 359 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.05 | 548 | 584 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0027 | 559 | 586 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 1.9E-4 | 560 | 580 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 821 aa Download sequence Send to blast |
MMEVGLNPGE ELDYGGNQED DDDAGDISPG SKELAAMVEA AAAAESVELD DGAAASAAQY 60 GDDRTPRDGM VFKSYEEVLN FYKRYALRTG FGVCVKKSSF TKAGLCRRLV LVCNKWGNGK 120 EDACYQARPT AKTNCQATVV ARLWGDGLLH LTDVNLEHNH ALNPSAARFL RCYKTLPSGM 180 SKDLVVRAAR GECSATGDID VPIFDDWGRL KIGEADVVAI NSFFADMQAK LPNSFYVMDF 240 YVEGHLRSVL WADSRSRAAY QYFDDAILID TTCLRNKYHV PLVSFLGVNN HGQLVLLGCG 300 LLSDESTESF LWLFKSWLTC MKGRSPNAVV TDECVAIKAA VREVFPKTRH RISDWHVLRS 360 VSEKLGELPE YEAMRTELET VIYDSLSDDE FEARWKNWID RFGLQDNEWI TFLYENRHLW 420 APAFLKDAFW AGLCTFSQRE SPSAFFEDSI NSETTLVSFL DSYMILLENK YKMEQQDDFD 480 SSNSSRVVIS KYPMEEQLSR LYTLNMFIRF QDELKATMHC QVQLDGSASS FIVIDLTEPA 540 TEMLNKKYEV VHCMAANKME CNCGLFQFCG IICRHALSVL KWQQVYDILP CYVLSRWRSD 600 FKLLHYSDNP SKDLATSNHV ERYDYISLQF LRLVEIGMSS DEKYRHAVRL IKDIKETLLD 660 DNLCRDLEQK LTPAERAIVN GDNHTQPGSS EGGPAKKRRG RPPKKSKEIS VDSMDSLLVS 720 TDVTQKGAFH SSSTASNLGS HVRTHGVVDL MEEVNPSELS FDSRYGVQSG HPHNFGNQLH 780 AGNTLQFGQP TSAAEHSRVQ WVYPNSMYQD DQVPYGRRTS * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.9G015600.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012698466.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 | ||||
Refseq | XP_012698467.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 | ||||
Refseq | XP_012698468.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | K4A5X2 | 0.0 | K4A5X2_SETIT; Uncharacterized protein | ||||
STRING | Si034276m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G80010.1 | 1e-120 | FAR1-related sequence 8 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.9G015600.3.p |