PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G007800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YC
Protein Properties Length: 363aa    MW: 38798.5 Da    PI: 11.2702
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G007800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC30.29.4e-102643471699
               NF-YC  16 fknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                         +   ++P+ar++++++a++   + + ea  l+ ka elf+ +++  ++ +a + +++++   ++++av   +  +fl d vp+ 
  Sevir.9G007800.1.p 264 MGSCSFPMARVRQLMRAEDATIRAANEAVFLINKASELFLGKFAEDAYRNALKDRKKSIIYDNLSTAVCTQKGLKFLSDFVPQR 347
                         55678***************99***********************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.61E-14265346IPR009072Histone-fold
PfamPF008082.2E-11268331IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.8E-18269346IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MAGKKATPVK PARPSTQRNG SATPGSKGRA KQASEEASAA SAKARSAPKP RKITKEKPAA  60
AKKKRDKPEP QEGSKRKKQQ ASGDAATPAK KRKKGDGPEP KPRKEPKPAK KQQPSGKPEK  120
PATPSRKQQP SGKPEKPATP SKKQQQSSGK PEKPATPAKK QQSPGKPEKP GTPAKKKQST  180
GKADKPAPTP KKQQQSPGKV RKSAAPATSP MKKREKPTPT KRKRGDDEPP KELRSPKRAS  240
GDGDAPASTP VKKRKDQKAA AAGMGSCSFP MARVRQLMRA EDATIRAANE AVFLINKASE  300
LFLGKFAEDA YRNALKDRKK SIIYDNLSTA VCTQKGLKFL SDFVPQRVTA EDALKATADN  360
KS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17593RKKQQASGDAATPAKKRKK
28894AKKRKKG
38993KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G007800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1849681e-115KF184968.1 Saccharum hybrid cultivar R570 clone BAC 261M16 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981017.10.0pollen-specific leucine-rich repeat extensin-like protein 1
TrEMBLA0A368SBV50.0A0A368SBV5_SETIT; Uncharacterized protein
STRINGSi039302m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128261922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.17e-23nuclear factor Y, subunit C10