PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.8G258400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 142aa MW: 14740.9 Da PI: 10.7829 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.4 | 0.001 | 39 | 61 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg++F++ L H +H Sevir.8G258400.1.p 39 FRCRTCGRCFRTFQALGGHRTSH 61 89**********99998888877 PP | |||||||
2 | zf-C2H2 | 17.4 | 1.2e-05 | 88 | 110 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg++F + L H+r+H Sevir.8G258400.1.p 88 HRCNTCGMVFATGQALGGHMRRH 110 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.3E-8 | 38 | 63 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.81E-8 | 39 | 110 | No hit | No description |
SMART | SM00355 | 0.49 | 39 | 61 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.596 | 39 | 66 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 41 | 61 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.3E-11 | 87 | 112 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.013 | 88 | 110 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.681 | 88 | 115 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 90 | 110 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MATSTARSTT AADLLLYLSL STASKVIAKK GGGGGGGAFR CRTCGRCFRT FQALGGHRTS 60 HKRPRVRADG LELLLGARPG KGAASDVHRC NTCGMVFATG QALGGHMRRH RAVPETTATA 120 TAFGDSEDDA GHLPIKLIEF I* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.8G258400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004980055.1 | 7e-74 | zinc finger protein ZAT8 | ||||
TrEMBL | K3ZK67 | 1e-72 | K3ZK67_SETIT; Uncharacterized protein | ||||
STRING | Si026973m | 3e-73 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6730 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53600.1 | 3e-16 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.8G258400.1.p |