PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G254800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 238aa    MW: 27205.1 Da    PI: 8.6721
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G254800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-171057148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT++Ed +lv+ v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
  Sevir.8G254800.1.p 10 KGPWTEQEDMQLVCTVRLFGDRRWDFIAQVSGLNRTGKSCRLRWVNYL 57
                        79********************************************97 PP
2Myb_DNA-binding551.9e-1764108248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         gr++++E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
  Sevir.8G254800.1.p  64 GRMSPQEERLIIELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 108
                         89*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.735557IPR017930Myb domain
SuperFamilySSF466891.47E-298104IPR009057Homeodomain-like
SMARTSM007171.1E-14959IPR001005SANT/Myb domain
PfamPF002494.9E-161057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-191164IPR009057Homeodomain-like
CDDcd001676.49E-111257No hitNo description
PROSITE profilePS5129426.17258112IPR017930Myb domain
SMARTSM007171.8E-1662110IPR001005SANT/Myb domain
PfamPF002499.0E-1664107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-2465111IPR009057Homeodomain-like
CDDcd001673.45E-1265108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MVTVREEMRK GPWTEQEDMQ LVCTVRLFGD RRWDFIAQVS GLNRTGKSCR LRWVNYLHPG  60
LKHGRMSPQE ERLIIELHAR WGNRWSRIAR RLPGRTDNEI KNYWRTHMRK KAQERKMSIS  120
PSSSSSSLTY QSCLLDTSPI IGMSSGDTHN GSSCVTSALD STQSSMDAYP MDQIWREIEA  180
PQAPALLGIA EGKEKTCSSI PCPLPSPAMW DYKCPEIFWK MEDEEIRMLA PSFGYGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-2871121105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00600PBMTransfer from AT5G59780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G254800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM3874100.0KM387410.1 Saccharum officinarum cultivar Badila R2R3-MYB transcription factor variant 1 mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980031.11e-178myb-related protein MYBAS1
SwissprotQ53NK61e-138MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLK3ZJP91e-176K3ZJP9_SETIT; Uncharacterized protein
STRINGSi026803m1e-177(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.32e-75myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]