PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.8G251400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 246aa MW: 28252.2 Da PI: 8.2388 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 33.4 | 1.5e-10 | 12 | 98 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.....dgkwevtkleleHnHel 89 fY +YA+ +GF v++ ++kk +r ++Cs+e k + k ++ + r++++ +t+Cka+lk ++ + + ++k +l HnH l Sevir.8G251400.1.p 12 FYMRYAQLAGFGVKMCNKKKF-------SRVMRCSCEEKGDFYKGDEALRVRNKTTMKTKCKAHLKFTRVYdsegsEVDMIIEKANLFHNHLL 97 9*************9987776.......677788888888877777779999***************998764333335678889999***88 PP FAR1 90 a 90 Sevir.8G251400.1.p 98 H 98 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-6 | 12 | 97 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MSFHTEAEAK AFYMRYAQLA GFGVKMCNKK KFSRVMRCSC EEKGDFYKGD EALRVRNKTT 60 MKTKCKAHLK FTRVYDSEGS EVDMIIEKAN LFHNHLLHTP LKTKKMRSHK STEPVLYQII 120 DELQEAGMST QSIKNVLQNM HGGAELVPIT SRDIENRKAT NVREEHADDI NKLIEFFKDC 180 GAQNPQFRWE LKLDSEGVIH SLFWSHASMQ GDYADFGDAM SFDTTHKTNI YEKPLTMFVG 240 SNHHL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.8G251400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | K3YLY1 | 1e-142 | K3YLY1_SETIT; Uncharacterized protein | ||||
STRING | Si015257m | 1e-143 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7609 | 10 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 8e-27 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.8G251400.1.p |