PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.8G238900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 510aa MW: 57808.6 Da PI: 7.5366 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.2 | 1.9e-18 | 317 | 364 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+llvd++k+ G g+W++ ++ g++R++k+c++rw +yl Sevir.8G238900.1.p 317 KGPWTPEEDKLLVDYIKENGHGSWRRLPKLAGLNRCGKSCRLRWTNYL 364 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50 | 6.9e-16 | 370 | 415 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r+ +T eE++l++++ lG++ W++Ia +++ gRt++++k++w+++l Sevir.8G238900.1.p 370 RDHFTDEEEKLIIHLLSILGNK-WSSIAPKLP-GRTDNEIKNYWYTHL 415 6789******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07887 | 6.5E-37 | 110 | 252 | IPR012416 | CALMODULIN-BINDING PROTEIN60 |
PROSITE profile | PS51294 | 25.333 | 312 | 368 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.16E-30 | 314 | 411 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-15 | 316 | 366 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-17 | 317 | 364 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-23 | 318 | 371 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.70E-11 | 319 | 364 | No hit | No description |
PROSITE profile | PS51294 | 20.494 | 369 | 419 | IPR017930 | Myb domain |
SMART | SM00717 | 8.2E-16 | 369 | 417 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-14 | 370 | 415 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-24 | 372 | 419 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.20E-11 | 373 | 415 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006950 | Biological Process | response to stress | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 510 aa Download sequence Send to blast |
MGNAHVLIHT TDKRFTTNPT TLAVQLVWDR PNVELSKRHW NLLDQLMPLP KFNNCGLPTT 60 RLMQEHLDSL TIISKEVMQI RRNRGVIIEP LEPDDSDEER QLKRKMRSKY KLRFVNKVCG 120 AYHTRDPIKA DDGSPLKVAL FDENNIKITY GPLSSASVQI VVLHGDFNDH GQDYWTSEEF 180 SRYEVCPRSG EVVLGGNCIL VLADGEACLG DAFFQMTSYC ARTAKFKMGI RLASAQEERI 240 QEGVSEQFWV KYRHFAGKAL VDNDYQEQNN PMPNLPYRSQ INAGNRLDII WGRSQLPFPG 300 SNMLSTEPST SDASVKKGPW TPEEDKLLVD YIKENGHGSW RRLPKLAGLN RCGKSCRLRW 360 TNYLRPDIKR DHFTDEEEKL IIHLLSILGN KWSSIAPKLP GRTDNEIKNY WYTHLRKKLL 420 SRGIDPVTHR PPNLLAGIPN LLAAGIPNLA AAAQTTWDIS TPCGEKTPAS SPFEGLGNLN 480 LDDEFNSDSS CRDLLEQMSW LNNPNEQQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-24 | 317 | 419 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.8G238900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727665 | 1e-114 | KJ727665.1 Zea mays clone pUT5592 MYB transcription factor (MYB148) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004979956.1 | 1e-176 | uncharacterized protein LOC101785879 isoform X4 | ||||
Refseq | XP_022684775.1 | 1e-176 | uncharacterized protein LOC101785879 isoform X6 | ||||
Refseq | XP_022684776.1 | 1e-176 | uncharacterized protein LOC101785879 isoform X6 | ||||
TrEMBL | K3ZPU8 | 1e-154 | K3ZPU8_SETIT; Uncharacterized protein | ||||
STRING | Si028628m | 1e-154 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15374 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 1e-62 | myb domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.8G238900.1.p |