PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G226500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HB-other
Protein Properties Length: 926aa    MW: 102267 Da    PI: 5.3359
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G226500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.47.6e-06693753154
                         TT--SS--HHHHHHHHHHHHHSSS--HHH..HHHHHHHC.....TS-HHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaee..reeLAkkl.....gLterqVkvWFqNrRak 54 
                         rrkRt +++eq++eLe++   ++ + +++   +  ++kl     ++t +q k+W  Nr+ak
  Sevir.8G226500.1.p 693 RRKRTIMNDEQIDELETALVDEPDMHKNAvlLQNWSEKLsmqgpEITASQLKNWLNNRKAK 753
                         89****************9986666655522578888888888*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-5673754IPR009057Homeodomain-like
SuperFamilySSF466898.42E-6690759IPR009057Homeodomain-like
PROSITE profilePS5007110.446690757IPR001356Homeobox domain
SMARTSM003895.8E-5692761IPR001356Homeobox domain
CDDcd000864.33E-5693756No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0060195Biological Processnegative regulation of antisense RNA transcription
GO:0005730Cellular Componentnucleolus
GO:0003697Molecular Functionsingle-stranded DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 926 aa     Download sequence    Send to blast
MIDMVSAIEE LSGLTTKELG EMLKESDSFV LQSKTEDGSP KQVDMEKLVS SLPLHLLAVC  60
LELGQGSDMA YVLRGVRFLH SLSELASRHT RLEQVLLDDV KISEQVMDLI FFLLSILAHR  120
KKENNVGASP LVHASLVAAS LHLLTSYFSS QWHELVHILL AHPKVDIFMD VAFDSLHEDV  180
RLLSIRLSAM GLSDVPVGSL ECHLAHFICQ QCETSLQFLL LLCQQKLFRD RILKNKELSR  240
NGGILSLSHT ILKLVVPECL KGSTDLVASV SRLKAKILSI LLQLCEAESV SYLDEVATSP  300
NSMRLGQTLA LEVLNLLKTA FGRKQKITSD SHNKSYPMGS VLISALRLVD VFSDDSNFRS  360
SFMTNTVPFL TQILAIPHDE FVLSWCSVNL PVVEEDANLD YDPFGAVEVA LLASDNALTE  420
AKANYSCPFR PSLPSMAYAQ TRTSCVVKII ANLHVFVPNI CEEQERDLFL QNFQKYLMSG  480
SPKQSVDQPN DFKATKVCIN LGSLSDYAKT LIPNFLNEED VQLLSDFSDK LQTWCKSQVG  540
QVAQQVVHTE TPSESKEDLH PVQQPLPTQA STPDSFMNNL KDVQNMEVST TAPSTKLEGN  600
ATDETPKNSR NGGFLQNAVG QDLVHLGVAR TASAGFSAVS SGVNTGYQRS KMDLDPASST  660
VDHFKTPELS KESGLQEDEK GETSMYDDRQ PKRRKRTIMN DEQIDELETA LVDEPDMHKN  720
AVLLQNWSEK LSMQGPEITA SQLKNWLNNR KAKLARIAKE RGVPFEGENS DKPSTPATPH  780
LGESSESAGE DSYLPPARVM NAISKGRLVS PDSSELTSSA EFSQNMMLSR PFTRSFSFEP  840
GRLVSLVDGD GKEVGRGKIF HAPPGKSSTE SRLCVVDVTE LRIEKWRELP HPSEASGRTF  900
QEAEVRNGGV IRVPWDVVRL APVAQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G226500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979857.10.0nodulin homeobox isoform X1
TrEMBLA0A368SAE60.0A0A368SAE6_SETIT; Uncharacterized protein
STRINGSi025937m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51261418