PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G185500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 569aa    MW: 61143.5 Da    PI: 5.6388
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G185500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM652.2e-20111383127
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkklelee..vikevdiykvePwdLp.k.kvka.eekewyfFskrdkkya....tgkrknratksgyWk 84 
                         +GfrF+Pt  e  ++yL + v+g +l+++   vi+++d+y +eP dL  + +    ++ + +fF++ + +++    + +r++ra+ sg W+
  Sevir.8G185500.1.p  11 RGFRFNPTPLESATYYLPRLVAGAPLHEAVrpVINHADVYGCEPADLArQfC-PLpRTGHRFFFTHCKLQQPqregKASRATRAAGSGSWH 100
                         7************************55532226**************83332.222455789999888777733334558888888***** PP

                 NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                         ++   k+v+++ g +vg  + L +     + g  tdW+m+ey+
  Sevir.8G185500.1.p 101 SQSV-KDVVDHAGVKVGEIRKLRYK----KGGAYTDWLMDEYS 138
                         9977.66667699***********8....456789*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.1889159IPR003441NAC domain
SuperFamilySSF1019411.44E-239159IPR003441NAC domain
PfamPF023652.0E-1111138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MAAPVPVIFS RGFRFNPTPL ESATYYLPRL VAGAPLHEAV RPVINHADVY GCEPADLARQ  60
FCPLPRTGHR FFFTHCKLQQ PQREGKASRA TRAAGSGSWH SQSVKDVVDH AGVKVGEIRK  120
LRYKKGGAYT DWLMDEYSCC LEDAVAGDRQ FVLCNIYVSP RADQGSAARQ ESAAFFAPPA  180
PAPVAIAQAA APKRPAPQSA EPPCPKRMRG AVAPTPPVVQ PAGYCTASFA PPLPYVPHIA  240
TSVQPPPPPV PTRLAAPPPS RSLEPAPPLT PPVVRSCHMP PVPTRLAAPP PSRSPAPTPL  300
QPRSLPKQQA PPATLPVVRA CHMPPVPTRL AALPPSRSPA PTPLQPRSLP KQQAPPATLP  360
VQQAPPATLP VVRACHMPVE APARHCQPPQ PSVQRKQRTR DPFEAAELGD EAEEAAPDPK  420
ESPAALVDQE DDWAELEKCM DDAVPTAEGS TMTEDEMDQH LSSLLFEESP AALVDQKDDW  480
AELEKCMDDA APTAEGSTMT EDEMDQHLSS LLFEEEEIPD AIAAPAPSPA SKGSKSSLQD  540
DLDLFRKIMD ETLRRSSSGM AVDELAWT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G185500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703694.11e-180uncharacterized protein LOC101768364
TrEMBLA0A368S8U70.0A0A368S8U7_SETIT; Uncharacterized protein
STRINGSi027763m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-09NAC domain containing protein 57