PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.8G185000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | Dof | ||||||||
Protein Properties | Length: 303aa MW: 31565.3 Da PI: 9.735 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 111.3 | 4.5e-35 | 40 | 99 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+ l+cprCdstntkfCyynn s++qPryfCkaCrr Wt+GG+lr vP+Gg++rknk+s Sevir.8G185000.1.p 40 QEQGLNCPRCDSTNTKFCYYNNNSMTQPRYFCKACRRNWTQGGTLRKVPIGGSSRKNKQS 99 68899*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-23 | 37 | 98 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.8E-32 | 42 | 98 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 26.739 | 44 | 98 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 46 | 82 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MVASPPREEA AAARNVKAKQ AWQQQMAASG GGERKPRPQQ EQGLNCPRCD STNTKFCYYN 60 NNSMTQPRYF CKACRRNWTQ GGTLRKVPIG GSSRKNKQSR AGGSSSSSSS APPAPSSTSN 120 DSNKMNLTQQ LMMMPTTTTP MPANFPNVLP TFMSAGSGSF GELPGSDHHS LPFPPLSLPS 180 NPTGTMPSLV GILRGGFPDG GMAALPFLPV PPSFGAMHQH GHGMMGGSSD QQLVGPLQGM 240 DQALKLPLAA ACGSGPQQWP SSAAPEQQVV GGDGRADKNN NNNGGGASGS SSGVEYYWHG 300 SI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.8G185000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF117793 | 0.0 | EF117793.2 Setaria italica clone GB-SIM-002 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004980692.1 | 0.0 | dof zinc finger protein PBF | ||||
TrEMBL | K3ZJ73 | 0.0 | K3ZJ73_SETIT; Uncharacterized protein | ||||
STRING | Si026626m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 5e-34 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.8G185000.1.p |