PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.8G184800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | Dof | ||||||||
Protein Properties | Length: 280aa MW: 29413.2 Da PI: 9.8403 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 114.3 | 5.2e-36 | 64 | 123 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+ l+cprC+stntkfCyynn s++qPryfCkaCrr Wt+GG+lrn+PvGgg+rknk++ Sevir.8G184800.1.p 64 QEQGLNCPRCNSTNTKFCYYNNNSMTQPRYFCKACRRNWTQGGTLRNIPVGGGSRKNKQN 123 68899****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-25 | 61 | 122 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.3E-32 | 66 | 122 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.428 | 68 | 122 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 70 | 106 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MELISSTTNN TTAPSAPQNK QEGAMVASPP REEADPARNV KAKQAQQQQV AASGASERKP 60 RPQQEQGLNC PRCNSTNTKF CYYNNNSMTQ PRYFCKACRR NWTQGGTLRN IPVGGGSRKN 120 KQNRAGSSSS SSPAPPAPSS SSTNSKKMNQ LTQQLLMMPT AMAPMPADFP IVLPTFMSTG 180 GGGFELPSSD HHSLPFPPLS LPSNPGTTPS LLDMLTGGFL DGGIGALPFL PTPPSFGAMQ 240 HGHGIMVGSH DQQLVDPLKG VDQALKPPMA ATGGSGLQQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.8G184800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004980691.1 | 1e-147 | dof zinc finger protein PBF | ||||
Swissprot | O24463 | 2e-52 | PBF_MAIZE; Dof zinc finger protein PBF | ||||
TrEMBL | K3ZLQ8 | 1e-159 | K3ZLQ8_SETIT; Uncharacterized protein | ||||
STRING | Si027519m | 1e-160 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 8e-36 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.8G184800.1.p |
Publications ? help Back to Top | |||
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