PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.8G184000.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

C2H2

Protein Properties

Length: 706aa MW: 77746.2 Da PI: 4.5676

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.8G184000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00052	342	364	3	23
ETTTT.EEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCg.ksFsrksnLkrHirt.H 23 Cp+C+ k F + +L +H+ + H Sevir.8G184000.1.p 342 CPICDrKKFVESGLLLSHMCNkH 364 *******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.10	9.6E-11	28	248	IPR011990	Tetratricopeptide-like helical domain
SuperFamily	SSF48452	4.49E-9	29	138	IPR011990	Tetratricopeptide-like helical domain
SuperFamily	SSF48452	4.49E-9	196	243	IPR011990	Tetratricopeptide-like helical domain
Pfam	PF04780	2.2E-11	287	376	IPR006865	Domain of unknown function DUF629

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 706 aa Download sequence Send to blast
MADADAAAAA AAEAVREVAT EILLIDHDGQ MDAALARARA LMLANQGSAV AHRLLGELHY 60 SAAVRAACGE GTPGERKAAA ASHLRVARDA LAEARRLAPD CVDVAAALGD ALAASRMYAE 120 AEAEFRRAQT IHRPSDPALH NAAYGMQLGV AEGRKRAKLV AETFPNLARA QHLQAYMDLE 180 FVRSLDAAID KRPFLRRTLA MAERAARAFP RSPVIASFHA RLLFVLGEYD AAERECRRAL 240 DMKEPDDPQM DCIPTWSIGG ENRGARLVSL ACEFHELLNK ILVAASDYWD SMNGESQRDG 300 FLRLRFDVLQ DEYRKVDRSC AFAMSDVRSF VEEHKAWRFW DCPICDRKKF VESGLLLSHM 360 CNKHPRAVLP RLQSLLDQTT LSDEALESDD SLDGVTFCED SAEQDMICFS KSSDVFKWLF 420 YAPSSGVGAK PFPELLEQKR EKGCMLLESI KDKMKTLPAD KSSTEFSEAL PRIRESWNEF 480 LKASVLDYRG AILTLARSFL WRELKKCMTE DPELAAKKIS ATDIDAVFTK EVEPSRAEED 540 RETGDNKQPS QADGALMVSG DYEESDVDVK DESCEKLENN MESSDPAISV AEGNNGLYAK 600 LDILDIDAKI SENNQESAVH VEKAEIPANN TKSADLATSV AQSGNDLDAT LDKLDIDPKI 660 NENNQESEVQ VEGESSVAMV TNTELSDPAT NMAESRNDLD AKSNF*

Sequence ? help Back to Top

Protein Sequence Length: 706 aa Download sequence Send to blast

MADADAAAAA AAEAVREVAT EILLIDHDGQ MDAALARARA LMLANQGSAV AHRLLGELHY  60
SAAVRAACGE GTPGERKAAA ASHLRVARDA LAEARRLAPD CVDVAAALGD ALAASRMYAE  120
AEAEFRRAQT IHRPSDPALH NAAYGMQLGV AEGRKRAKLV AETFPNLARA QHLQAYMDLE  180
FVRSLDAAID KRPFLRRTLA MAERAARAFP RSPVIASFHA RLLFVLGEYD AAERECRRAL  240
DMKEPDDPQM DCIPTWSIGG ENRGARLVSL ACEFHELLNK ILVAASDYWD SMNGESQRDG  300
FLRLRFDVLQ DEYRKVDRSC AFAMSDVRSF VEEHKAWRFW DCPICDRKKF VESGLLLSHM  360
CNKHPRAVLP RLQSLLDQTT LSDEALESDD SLDGVTFCED SAEQDMICFS KSSDVFKWLF  420
YAPSSGVGAK PFPELLEQKR EKGCMLLESI KDKMKTLPAD KSSTEFSEAL PRIRESWNEF  480
LKASVLDYRG AILTLARSFL WRELKKCMTE DPELAAKKIS ATDIDAVFTK EVEPSRAEED  540
RETGDNKQPS QADGALMVSG DYEESDVDVK DESCEKLENN MESSDPAISV AEGNNGLYAK  600
LDILDIDAKI SENNQESAVH VEKAEIPANN TKSADLATSV AQSGNDLDAT LDKLDIDPKI  660
NENNQESEVQ VEGESSVAMV TNTELSDPAT NMAESRNDLD AKSNF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.8G184000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004980687.1	0.0	uncharacterized protein LOC101765117
TrEMBL	A0A368S929	0.0	A0A368S929_SETIT; Uncharacterized protein
STRING	Si027751m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1389	4	4

Link Out ? help Back to Top
Phytozome	Sevir.8G184000.1.p