PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G182200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 221aa    MW: 23486.6 Da    PI: 8.7047
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G182200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.62.1e-1554104255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         g+ GVr ++ +g ++AeIrd + +g  +r++lg+f+t+e Aa a+++a+ + +g
  Sevir.8G182200.1.p  54 GFIGVRPRP-WGTFAAEIRDSTRRG--ARVWLGTFDTPEAAALAYDQAAFSARG 104
                         789***999.**********43343..***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.32354112IPR001471AP2/ERF domain
SMARTSM003806.2E-2754118IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-1954113IPR016177DNA-binding domain
PfamPF008477.8E-1154104IPR001471AP2/ERF domain
CDDcd000181.44E-115589No hitNo description
Gene3DG3DSA:3.30.730.108.9E-2655112IPR001471AP2/ERF domain
PRINTSPR003672.9E-75566IPR001471AP2/ERF domain
PRINTSPR003672.9E-77894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MAAAAAAKEC SDGLSSTSSS STMAGMVWPN TWDQQQQPDA GASPSPGETE KREGFIGVRP  60
RPWGTFAAEI RDSTRRGARV WLGTFDTPEA AALAYDQAAF SARGAAAVLN FTVDRVRESL  120
APLALAAGAG GGSPVLALKR RHSKRRTRRR RKRLCSKCMA DGKDLQPPCQ CSDVSATAMA  180
VPQQQVTAAR CQVRFGVLEL EDLGADYLDE LLRISCELAA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-22551111571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138152KRRHSKRRTRRRRKR
2139153RRHSKRRTRRRRKRL
3143152KRRTRRRRKR
4144152RRTRRRRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G182200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980680.11e-157ethylene-responsive transcription factor ERF094
TrEMBLA0A368S9061e-156A0A368S906_SETIT; Uncharacterized protein
STRINGSi028135m1e-151(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3228924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.15e-29ethylene response factor 1