PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.8G157600.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Dof

Protein Properties

Length: 319aa MW: 33460.1 Da PI: 7.4613

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.8G157600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	109.8	1.3e-34	64	122	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +e+ l+cprC+stntkfCyynn s++qPryfCkaCrr Wt+GG+lrnvPvGg +rknk Sevir.8G157600.1.p 64 QEQGLNCPRCNSTNTKFCYYNNNSMTQPRYFCKACRRNWTQGGTLRNVPVGGRSRKNKL 122 68899****************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-24	61	121	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.2E-32	66	121	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.878	68	122	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	70	106	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MDMTSSTTSN TTAQSVVQNK QEAAMVASPP REEAAAARNI KANQAWQQQV AATGGGERKP 60 RPQQEQGLNC PRCNSTNTKF CYYNNNSMTQ PRYFCKACRR NWTQGGTLRN VPVGGRSRKN 120 KLNRAGGSSS SSTPPAPSSS SNDSKKMNLT QQLSMMPTAT APMPADFPNV LPTFMLTGGG 180 FELPSSDHHS LPFPPLSPLF NPGTTPSLLD ILTGGFLDSG NNRMAASPLL GTMQHGHGMM 240 GGSHDPQLVG LLQGVDQALE LPMPAAGGGF QQWPSLAAQE QQVVGGDGSA DMDDDNNNNG 300 GGASGGSSGV ENYWQGSI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.8G157600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF117793	1e-119	EF117793.2 Setaria italica clone GB-SIM-002 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004980592.1	0.0	dof zinc finger protein PBF
TrEMBL	A0A368S7T6	0.0	A0A368S7T6_SETIT; Uncharacterized protein
STRING	Si026678m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-35	Dof family protein

Link Out ? help Back to Top
Phytozome	Sevir.8G157600.1.p